Top workflows by tests

snakemake-workflows

A template for standard compliant snakemake-workflows


Updated: 2025-07-26 Release: Noneformatting: passedlinting: passed

StergachisLab

Pipeline for MAS-Seq processing


Updated: 2025-07-25 Release: Noneformatting: passedlinting: passed

snakemake-workflows

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.


Updated: 2025-07-23 Release: v3.0.0formatting: passedlinting: passed

snakemake-workflows

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…


Updated: 2025-07-14 Release: v1.12.2formatting: passedlinting: passed

r1cheu

genome annotation workflow


Updated: 2025-07-14 Release: v0.1.0formatting: passedlinting: passed

snakemake-workflows

A Snakemake workflow for counting single cell RNAseq (scRNA-seq) data with Cell Ranger (Cell Ranger …


Updated: 2025-07-11 Release: v1.0.0formatting: passedlinting: passed

calliope-project

A module to create arbitrary regional boundary datasets for energy systems modelling


Updated: 2025-07-09 Release: v0.1.3formatting: passedlinting: passed

calliope-project

No description available.


Updated: 2025-07-09 Release: v0.1.1formatting: passedlinting: passed

MPUSP

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.


Updated: 2025-07-09 Release: v1.3.0formatting: passedlinting: passed

calliope-project

A module to compute road transport timeseries and yearly values.


Updated: 2025-07-08 Release: Noneformatting: passedlinting: passed

tdayris

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…


Updated: 2025-07-01 Release: 3.10.0formatting: passedlinting: passed

EloiseEsox

No description available.


Updated: 2025-06-27 Release: Noneformatting: passedlinting: passed

IKIM-Essen

No description available.


Updated: 2025-06-26 Release: Noneformatting: passedlinting: passed

SveTho

No description available.


Updated: 2025-06-25 Release: Noneformatting: passedlinting: passed

kircherlab

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…


Updated: 2025-06-25 Release: v0.5.4formatting: passedlinting: passed