Top workflows by tests

tdayris

fair_genome_indexer

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…

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Updated: 2025-06-13 Release: 3.10.0formatting: passedlinting: passed

0 stars

1 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2025-06-12 Release: v1.12.2formatting: passedlinting: passed

12 stars

1 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2025-06-12 Release: Noneformatting: passedlinting: passed

4 stars

5 watchers

snakemake-workflows

dna-seq-short-read-circle-map

A snakemake workflow for calling extrachromosomal circular DNA in Illumina short-read sequencing dat…

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Updated: 2025-06-11 Release: v1.3.0formatting: passedlinting: passed

0 stars

2 watchers

MPUSP

snakemake-ont-basecalling

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

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Updated: 2025-06-11 Release: v1.2.1formatting: passedlinting: passed

4 stars

2 watchers

calliope-project

module_hydropower

No description available.

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Updated: 2025-06-07 Release: v0.1.1formatting: passedlinting: passed

0 stars

2 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2025-06-07 Release: v0.1.3formatting: passedlinting: passed

0 stars

2 watchers

tucca-cellag

tucca-rna-seq

Tufts University Center for Cellular Agriculture’s RNA-Seq Workflow for Cellular Agriculture Project…

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Updated: 2025-06-06 Release: v0.9.0formatting: passedlinting: passed

1 stars

1 watchers

snakemake-workflows

snakemake-workflow-template

A template for standard compliant snakemake-workflows

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Updated: 2025-05-17 Release: Noneformatting: passedlinting: passed

96 stars

1 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2025-05-15 Release: v0.5.3formatting: passedlinting: passed

5 stars

1 watchers

metagenome-atlas

metagenome_instrain

No description available.

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Updated: 2025-05-14 Release: Noneformatting: passedlinting: passed

0 stars

1 watchers

dlaehnemann

rna-seq-conservative-fold-change-without-replicates

snakemake workflow to determine conservative fold changes between transcriptomic samples when no bio…

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Updated: 2025-05-02 Release: v1.5.1formatting: passedlinting: passed

0 stars

1 watchers

DavideBrex

SpikeFlow

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalizatio…

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Updated: 2025-04-22 Release: v1.3.1formatting: passedlinting: passed

13 stars

1 watchers

zavolanlab

zarp

The Zavolab Automated RNA-seq Pipeline

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Updated: 2025-04-22 Release: v1.0.0formatting: passedlinting: passed

35 stars

6 watchers

dbespiatykh

RDscan

A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC…

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Updated: 2025-03-13 Release: v1.0.5formatting: passedlinting: passed

6 stars

2 watchers