Top workflows by tests

IKIM-Essen

QC_pre_NextSeq

Workflow for short quality control of MiSeq sequencing data before sequencing on high throughput dev…

---

Updated: 2025-08-14 Release: Noneformatting: passedlinting: passed

0 stars

1 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

---

Updated: 2025-08-13 Release: v0.9.1formatting: passedlinting: passed

6 stars

4 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

---

Updated: 2025-08-12 Release: v1.2.0formatting: passedlinting: passed

1 stars

1 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

---

Updated: 2025-08-11 Release: v0.1.4formatting: passedlinting: passed

0 stars

2 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

---

Updated: 2025-08-09 Release: Noneformatting: passedlinting: passed

7 stars

5 watchers

niekwit

methyl-seq

Snakemake workflow for bisulphite sequencing analysis

---

Updated: 2025-08-05 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

---

Updated: 2025-08-04 Release: v3.0.0formatting: passedlinting: passed

68 stars

4 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

---

Updated: 2025-08-01 Release: v1.13.0formatting: passedlinting: passed

12 stars

1 watchers

snakemake-workflows

snakemake-workflow-template

A template for standard compliant snakemake-workflows

---

Updated: 2025-07-29 Release: v1.1.0formatting: passedlinting: passed

107 stars

2 watchers

r1cheu

gnnotator

genome annotation workflow

---

Updated: 2025-07-14 Release: v0.1.0formatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

cellranger-count

A Snakemake workflow for counting single cell RNAseq (scRNA-seq) data with Cell Ranger (Cell Ranger …

---

Updated: 2025-07-11 Release: v1.0.0formatting: passedlinting: passed

0 stars

0 watchers

calliope-project

module_hydropower

No description available.

---

Updated: 2025-07-09 Release: v0.1.1formatting: passedlinting: passed

0 stars

2 watchers

MPUSP

snakemake-ont-basecalling

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

---

Updated: 2025-07-09 Release: v1.3.0formatting: passedlinting: passed

4 stars

2 watchers

calliope-project

module_road_transport

A module to compute road transport timeseries and yearly values.

---

Updated: 2025-07-08 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

tdayris

fair_genome_indexer

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…

---

Updated: 2025-07-01 Release: 3.10.0formatting: passedlinting: passed

0 stars

1 watchers