Top workflows by tests

tdayris

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…


Updated: 2025-07-01 Release: 3.10.0formatting: passedlinting: passed

snakemake-workflows

A template for standard compliant snakemake-workflows


Updated: 2025-06-28 Release: Noneformatting: passedlinting: passed

EloiseEsox

No description available.


Updated: 2025-06-27 Release: Noneformatting: passedlinting: passed

IKIM-Essen

No description available.


Updated: 2025-06-26 Release: Noneformatting: passedlinting: passed

SveTho

No description available.


Updated: 2025-06-25 Release: Noneformatting: passedlinting: passed

snakemake-workflows

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…


Updated: 2025-06-25 Release: v1.12.2formatting: passedlinting: passed

kircherlab

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…


Updated: 2025-06-25 Release: v0.5.4formatting: passedlinting: passed

MPUSP

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.


Updated: 2025-06-25 Release: v1.2.2formatting: passedlinting: passed

MPUSP

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.


Updated: 2025-06-20 Release: v1.1.1formatting: passedlinting: passed

calliope-project

No description available.


Updated: 2025-06-20 Release: Noneformatting: passedlinting: passed

StergachisLab

Pipeline for MAS-Seq processing


Updated: 2025-06-16 Release: Noneformatting: passedlinting: passed

snakemake-workflows

A snakemake workflow for calling extrachromosomal circular DNA in Illumina short-read sequencing dat…


Updated: 2025-06-11 Release: v1.3.0formatting: passedlinting: passed

calliope-project

No description available.


Updated: 2025-06-07 Release: v0.1.1formatting: passedlinting: passed

calliope-project

A module to create arbitrary regional boundary datasets for energy systems modelling


Updated: 2025-06-07 Release: v0.1.3formatting: passedlinting: passed

tucca-cellag

Tufts University Center for Cellular Agriculture’s RNA-Seq Workflow for Cellular Agriculture Project…


Updated: 2025-06-06 Release: v0.9.0formatting: passedlinting: passed