Top workflows by tests

snakemake-workflows

single-cell-counts-preprocessing

A standardised Snakemake workflow for preprocessing of single-cell RNAseq count data following singl…

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Updated: 2026-09-04 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

daspacio9

pooledpremiumpcrpipeline2

A snakemake pipeline for multiplex sequencing using the Plasmidsaurus Premium PCR service

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Updated: 2026-09-03 Release: v4.0.2formatting: passedlinting: passed

6 stars

0 watchers

modelblocks-org

module_euro_building_heat

This module prepares time series of heat demand and heat supply technologies for buildings in Europ…

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Updated: 2026-09-03 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-assembly-postprocessing

A Snakemake workflow for the post-processing of microbial genome assemblies.

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Updated: 2026-09-02 Release: v1.4.0formatting: passedlinting: passed

2 stars

1 watchers

FilippoGas

GeneProgramsProfiler

Characterize cell type specific gene program deregulations from scRNAseq datasets.

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Updated: 2026-08-28 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

modelblocks-org

module_geo_boundaries

Custom-made geopolitical boundary datasets for energy systems modelling 🌎

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Updated: 2026-08-26 Release: v1.0.1formatting: passedlinting: passed

5 stars

2 watchers

TRON-Bioinformatics

oblx

Reproducible generation of references and resources for next generation sequencing pipelines.

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Updated: 2026-08-26 Release: v2.0.2formatting: passedlinting: passed

5 stars

0 watchers

b-brankovics

smkwf-STRAf-typing

Snakemake workflow for STRAf typing Aspergillus fumigatus genome assemblies

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Updated: 2026-08-25 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

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Updated: 2026-08-20 Release: v1.8.0formatting: passedlinting: passed

1 stars

1 watchers

snakemake-workflows

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

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Updated: 2026-08-17 Release: v4.1.0formatting: passedlinting: passed

69 stars

3 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2026-08-17 Release: v1.17.0formatting: passedlinting: passed

13 stars

0 watchers

MPUSP

snakemake-ms-proteomics

Pipeline for automatic processing and quality control of mass spectrometry data

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Updated: 2026-08-14 Release: v1.1.0formatting: passedlinting: passed

14 stars

1 watchers

modelblocks-org

module_powerplants

Harmonised global powerplant data at any resolution 🏭⚡

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Updated: 2026-08-07 Release: v0.1.0formatting: passedlinting: passed

1 stars

2 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2026-08-06 Release: v0.7.2formatting: passedlinting: passed

16 stars

1 watchers

boulardlab

3t-seq

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

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Updated: 2026-08-06 Release: v1.1.0formatting: passedlinting: passed

8 stars

1 watchers