Top workflows by tests

KasperSkytte

snakemake_usearch

Simple snakemake workflow based on the usearch11 SOP

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Updated: 2026-01-16 Release: v1.2.1formatting: passedlinting: passed

0 stars

1 watchers

snakemake-workflows

snakemake-workflow-template

A template for standard compliant snakemake-workflows

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Updated: 2026-01-16 Release: v1.1.0formatting: passedlinting: passed

122 stars

1 watchers

aryazand

fastq-process-align

snakemake based pipeline for processing and mapping fastq files

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Updated: 2026-01-16 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2026-01-14 Release: v0.1.8formatting: passedlinting: passed

1 stars

2 watchers

snakemake-workflows

star-arriba-fusion-calling

A standardized snakemake workflow to map RNAseq reads with star and call fusions on the resulting al…

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Updated: 2026-01-13 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

aryazand

genome_browser_workflow

No description available.

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Updated: 2026-01-12 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-ont-basecalling

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

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Updated: 2026-01-08 Release: v1.5.2formatting: passedlinting: passed

5 stars

2 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2026-01-07 Release: v0.5.9formatting: passedlinting: passed

13 stars

1 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

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Updated: 2026-01-02 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

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Updated: 2025-12-18 Release: v1.5.0formatting: passedlinting: passed

1 stars

1 watchers

snakemake-workflows

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

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Updated: 2025-12-18 Release: v3.1.1formatting: passedlinting: passed

350 stars

12 watchers

calliope-project

module_euro_industry

No description available.

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Updated: 2025-12-18 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

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Updated: 2025-12-18 Release: v4.0.0formatting: passedlinting: passed

68 stars

3 watchers

fcaretti

SNPs_from_RNA

A Snakemake workflow to call variants (SNPs) from bulk RNA-seq samples

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Updated: 2025-12-11 Release: v1.0.0formatting: passedlinting: passed

1 stars

1 watchers

MPUSP

snakemake-assembly-postprocessing

A Snakemake workflow for the post-processing of microbial genome assemblies.

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Updated: 2025-12-10 Release: v1.1.0formatting: passedlinting: passed

1 stars

0 watchers