Top workflows by tests

dlaehnemann

filter-non-coding-variants-with-optimized-cadd-thresholds

A standardized snakemake workflow for annotating variants with CADD scores and filtering non-coding …

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Updated: 2025-11-28 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-ont-basecalling

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

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Updated: 2025-11-28 Release: v1.5.0formatting: passedlinting: passed

4 stars

2 watchers

tucca-cellag

tucca-rna-seq

TUCCA’s RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment An…

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Updated: 2025-11-26 Release: v1.0.0formatting: passedlinting: passed

18 stars

12 watchers

LiaOb21

FSP_assembly_benchmarking

No description available.

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Updated: 2025-11-20 Release: v_2.0.0formatting: passedlinting: passed

1 stars

0 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2025-11-19 Release: v6.1.2formatting: passedlinting: passed

86 stars

6 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

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Updated: 2025-11-19 Release: v1.4.1formatting: passedlinting: passed

1 stars

1 watchers

Bioinflows-Bioversity-CIAT

ont-target-dna-variant-calling

A reproducible Snakemake pipeline for variant calling from multiplexed ONT targeted sequencing data …

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Updated: 2025-11-17 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

calliope-project

module_area_potentials

Geospatial analysis to determine available land area for energy infrastructure

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Updated: 2025-11-17 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-crispr-guides

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

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Updated: 2025-11-14 Release: v1.5.4formatting: passedlinting: passed

8 stars

1 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2025-11-10 Release: v0.1.6formatting: passedlinting: passed

1 stars

2 watchers

snakemake-workflows

cellranger-multi

A Snakemake workflow for preprocessing single cell RNAseq (scRNA-seq) data with cellranger multi (…

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Updated: 2025-11-05 Release: v2.0.0formatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

effect-size-estimation

Generic, uncertainty aware, parameter free effect size estimation

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Updated: 2025-11-05 Release: v1.2.0formatting: passedlinting: passed

0 stars

1 watchers

snakemake-workflows

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

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Updated: 2025-10-31 Release: v3.0.0formatting: passedlinting: passed

68 stars

3 watchers

IKIM-Essen

metagenomics_res

No description available.

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Updated: 2025-10-30 Release: Noneformatting: passedlinting: passed

1 stars

1 watchers

mdondrup

mytemplate_wf

No description available.

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Updated: 2025-10-23 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers