Top workflows by tests

ylab-hi

ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources

---

Updated: 2026-05-28 Release: v0.3.15formatting: passedlinting: passed

19 stars

3 watchers

babasaraki

snakemake-workshop-NBIS

No description available.

---

Updated: 2026-05-26 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

babasaraki

NSIB

No description available.

---

Updated: 2026-05-26 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

modelblocks-org

module_co2stop_cdr

A module to aggregate European CDR potential from the CO2Stop dataset into flexible spatial resoluti…

---

Updated: 2026-05-25 Release: v0.1.3formatting: passedlinting: passed

0 stars

0 watchers

abrahanhernandez

scWGA

No description available.

---

Updated: 2026-05-25 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

johnne

mytestworkflow

No description available.

---

Updated: 2026-05-25 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

epigen

unsupervised_analysis

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensio…

---

Updated: 2026-05-18 Release: v4.0.1formatting: passedlinting: passed

67 stars

4 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

---

Updated: 2026-05-09 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

---

Updated: 2026-05-06 Release: v0.6.5formatting: passedlinting: passed

16 stars

1 watchers

isaacvock

PROseq_etal

PRO-seq + ChIP-seq pipeline, with potential NET-seq/ATAC-seq/etc. extensions

---

Updated: 2026-04-30 Release: v1.0.0formatting: passedlinting: passed

0 stars

1 watchers

MPUSP

snakemake-bacterial-rnaseq-processing

A Snakemake workflow for the processing of short read rnaseq data in bacteria.

---

Updated: 2026-04-29 Release: v2.0.0formatting: passedlinting: passed

2 stars

1 watchers

emilymlayton

variant_calling_snakemake

No description available.

---

Updated: 2026-04-28 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-crispr-guides

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

---

Updated: 2026-04-27 Release: v1.7.1formatting: passedlinting: passed

8 stars

1 watchers

MPUSP

snakemake-assembly-postprocessing

A Snakemake workflow for the post-processing of microbial genome assemblies.

---

Updated: 2026-04-22 Release: v1.3.0formatting: passedlinting: passed

1 stars

0 watchers

modelblocks-org

module_euro_gas_grid

A module to create disaggregated gas grid networks and H2 retrofits for European countries.

---

Updated: 2026-04-17 Release: v0.1.1formatting: passedlinting: passed

0 stars

0 watchers