Top workflows by tests
tdayris
Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…
Updated: 2025-07-01 Release: 3.10.0formatting: passedlinting: passed
snakemake-workflows
A template for standard compliant snakemake-workflows
Updated: 2025-06-28 Release: Noneformatting: passedlinting: passed
EloiseEsox
No description available.
Updated: 2025-06-27 Release: Noneformatting: passedlinting: passed
IKIM-Essen
No description available.
Updated: 2025-06-26 Release: Noneformatting: passedlinting: passed
SveTho
snakemake-workflows
A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…
Updated: 2025-06-25 Release: v1.12.2formatting: passedlinting: passed
kircherlab
With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…
Updated: 2025-06-25 Release: v0.5.4formatting: passedlinting: passed
MPUSP
A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.
Updated: 2025-06-25 Release: v1.2.2formatting: passedlinting: passed
MPUSP
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
Updated: 2025-06-20 Release: v1.1.1formatting: passedlinting: passed
calliope-project
No description available.
Updated: 2025-06-20 Release: Noneformatting: passedlinting: passed
StergachisLab
Pipeline for MAS-Seq processing
Updated: 2025-06-16 Release: Noneformatting: passedlinting: passed
snakemake-workflows
A snakemake workflow for calling extrachromosomal circular DNA in Illumina short-read sequencing dat…
Updated: 2025-06-11 Release: v1.3.0formatting: passedlinting: passed
calliope-project
No description available.
Updated: 2025-06-07 Release: v0.1.1formatting: passedlinting: passed
calliope-project
A module to create arbitrary regional boundary datasets for energy systems modelling
Updated: 2025-06-07 Release: v0.1.3formatting: passedlinting: passed
tucca-cellag
Tufts University Center for Cellular Agriculture’s RNA-Seq Workflow for Cellular Agriculture Project…
Updated: 2025-06-06 Release: v0.9.0formatting: passedlinting: passed