Top workflows by tests

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

---

Updated: 2026-05-09 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

epigen

unsupervised_analysis

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensio…

---

Updated: 2026-05-07 Release: v4.0.0formatting: passedlinting: passed

67 stars

4 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

---

Updated: 2026-05-06 Release: v0.6.5formatting: passedlinting: passed

16 stars

1 watchers

isaacvock

PROseq_etal

PRO-seq + ChIP-seq pipeline, with potential NET-seq/ATAC-seq/etc. extensions

---

Updated: 2026-04-30 Release: v1.0.0formatting: passedlinting: passed

0 stars

1 watchers

MPUSP

snakemake-bacterial-rnaseq-processing

A Snakemake workflow for the processing of short read rnaseq data in bacteria.

---

Updated: 2026-04-29 Release: v2.0.0formatting: passedlinting: passed

2 stars

1 watchers

emilymlayton

variant_calling_snakemake

No description available.

---

Updated: 2026-04-28 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-crispr-guides

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

---

Updated: 2026-04-27 Release: v1.7.1formatting: passedlinting: passed

8 stars

1 watchers

MPUSP

snakemake-assembly-postprocessing

A Snakemake workflow for the post-processing of microbial genome assemblies.

---

Updated: 2026-04-22 Release: v1.3.0formatting: passedlinting: passed

1 stars

0 watchers

modelblocks-org

module_euro_gas_grid

A module to create disaggregated gas grid networks and H2 retrofits for European countries.

---

Updated: 2026-04-17 Release: v0.1.1formatting: passedlinting: passed

0 stars

0 watchers

DavideBrex

SpikeFlow

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalizatio…

---

Updated: 2026-04-11 Release: v1.3.2formatting: passedlinting: passed

14 stars

1 watchers

snakemake-workflows

star-arriba-fusion-calling

A standardized snakemake workflow to map RNAseq reads with star and call fusions on the resulting al…

---

Updated: 2026-04-09 Release: v1.0.2formatting: passedlinting: passed

0 stars

0 watchers

liezeltamon

feature-module-reduction

Snakemake pipeline using Bashford-Rogers-lab/vdjremix R package

---

Updated: 2026-04-07 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

boulardlab

3t-seq

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

---

Updated: 2026-04-07 Release: v1.1.0formatting: passedlinting: passed

8 stars

1 watchers

MPUSP

snakemake-bacterial-riboseq

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

---

Updated: 2026-04-07 Release: v1.6.0formatting: passedlinting: passed

5 stars

1 watchers

rglez

bflow-smk

Snakemake workflow to run BBFlow

---

Updated: 2026-04-05 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers