Top workflows by tests

dlaehnemann

rna-seq-conservative-fold-change-without-replicates

snakemake workflow to determine conservative fold changes between transcriptomic samples when no bio…

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Updated: 2025-04-03 Release: v1.5.0formatting: passedlinting: passed

0 stars

1 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2025-04-03 Release: v1.12.0formatting: passedlinting: passed

12 stars

1 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2025-04-03 Release: v0.1.2formatting: passedlinting: passed

0 stars

2 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2025-04-03 Release: v0.4.7formatting: passedlinting: passed

4 stars

1 watchers

durr1602

gyoza

Snakemake pipeline to analyze demultiplexed sequencing data of DMS experiment, produce diagnostics p…

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Updated: 2025-03-27 Release: v1.0.1formatting: passedlinting: passed

1 stars

1 watchers

dbespiatykh

RDscan

A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC…

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Updated: 2025-03-13 Release: v1.0.5formatting: passedlinting: passed

6 stars

2 watchers

tdayris

fair_macs2_calling

Snakemake workflow used to call peaks with Macs2

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Updated: 2025-03-07 Release: 3.2.2formatting: passedlinting: passed

0 stars

1 watchers

tdayris

fair_genome_indexer

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…

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Updated: 2025-03-07 Release: 3.9.7formatting: passedlinting: passed

0 stars

1 watchers

SchlossLab

mikropml-snakemake-workflow

Snakemake template for building reusable and scalable machine learning pipelines with mikropml

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Updated: 2025-02-26 Release: v1.3.0formatting: passedlinting: passed

12 stars

7 watchers

dlaehnemann

create-ecdna-testing-data

A Snakemake workflow for creating testing data for ecDNA analysis workflows: long reads (Nanopore wi…

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Updated: 2025-02-12 Release: v1.0.0formatting: passedlinting: passed

0 stars

1 watchers

DavideBrex

SpikeFlow

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalizatio…

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Updated: 2025-02-12 Release: v1.3.1formatting: passedlinting: passed

11 stars

1 watchers

IKIM-Essen

metagenomics_res

No description available.

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Updated: 2025-02-10 Release: Noneformatting: passedlinting: passed

1 stars

1 watchers

tdayris

fair_rnaseq_salmon_quant

Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon

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Updated: 2025-02-05 Release: 1.3.1formatting: passedlinting: passed

0 stars

1 watchers

MPUSP

snakemake-bacterial-riboseq

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

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Updated: 2025-02-02 Release: v1.4.0formatting: passedlinting: passed

2 stars

1 watchers

MPUSP

snakemake-ms-proteomics

Pipeline for automatic processing and quality control of mass spectrometry data

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Updated: 2025-01-30 Release: v1.0.0formatting: passedlinting: passed

4 stars

1 watchers