Top workflows by tests

MPUSP

snakemake-ms-proteomics

Pipeline for automatic processing and quality control of mass spectrometry data

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Updated: 2026-08-14 Release: v1.1.0formatting: passedlinting: passed

14 stars

1 watchers

TRON-Bioinformatics

oblx

Reproducible generation of references and resources for next generation sequencing pipelines.

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Updated: 2026-08-14 Release: v2.0.0formatting: passedlinting: passed

5 stars

0 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2026-08-13 Release: v1.17.0formatting: passedlinting: passed

13 stars

0 watchers

snakemake-workflows

single-cell-counts-preprocessing

A standardised Snakemake workflow for preprocessing of single-cell RNAseq count data following singl…

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Updated: 2026-08-12 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

modelblocks-org

module_powerplants

Harmonised global powerplant data at any resolution 🏭⚡

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Updated: 2026-08-07 Release: v0.1.0formatting: passedlinting: passed

1 stars

2 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2026-08-06 Release: v0.7.2formatting: passedlinting: passed

16 stars

1 watchers

boulardlab

3t-seq

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

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Updated: 2026-08-06 Release: v1.1.0formatting: passedlinting: passed

8 stars

1 watchers

snakemake-workflows

dna-seq-mtb

A flavor of https://github.com/snakemake-workflows/dna-seq-varlociraptor preconfigured for molecular…

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Updated: 2026-08-06 Release: v1.13.2formatting: passedlinting: passed

4 stars

1 watchers

varlociraptor

varlociraptor-methylation-evaluation

No description available.

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Updated: 2026-08-04 Release: v1.0.2formatting: passedlinting: passed

1 stars

1 watchers

epigen

unsupervised_analysis

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensio…

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Updated: 2026-08-03 Release: v4.0.1formatting: passedlinting: passed

67 stars

4 watchers

modelblocks-org

module_geo_boundaries

Custom-made geopolitical boundary datasets for energy systems modelling 🌎

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Updated: 2026-08-03 Release: v1.0.1formatting: passedlinting: passed

5 stars

2 watchers

Siffreya

MKD_eDNA_biodiversity

No description available.

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Updated: 2026-07-22 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

rna-seq-xengsort

A standardized Snakemake workflow to separate host and graft sequencing reads from RNAseq data using…

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Updated: 2026-07-21 Release: v1.1.0formatting: passedlinting: passed

0 stars

0 watchers

modelblocks-org

module_demand_electricity

A module to prepare demand profiles for Europe at arbitrary spatial resolution, based on ENTSO-E his…

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Updated: 2026-07-18 Release: v0.1.0formatting: passedlinting: passed

0 stars

0 watchers

modelblocks-org

module_euro_gas_grid

A module to create disaggregated gas grid networks and H2 retrofits for European countries.

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Updated: 2026-07-17 Release: v0.1.3formatting: passedlinting: passed

0 stars

0 watchers