Top workflows by tests

FilippoGas

HapScorer

Haplotype-resolved variant effect prediction

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Updated: 2026-10-16 Release: Noneformatting: passedlinting: passed

1 stars

1 watchers

cbib

SpaceBlocks

No description available.

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Updated: 2026-10-15 Release: v0.5.1formatting: passedlinting: passed

5 stars

0 watchers

snakemake-workflows

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

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Updated: 2026-10-15 Release: v4.1.1formatting: passedlinting: passed

69 stars

3 watchers

modelblocks-org

module_hydropower

Calculate hydropower inflow timeseries around the globe 🌊

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Updated: 2026-10-14 Release: v0.2.2formatting: passedlinting: passed

0 stars

2 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2026-10-12 Release: v0.7.2formatting: passedlinting: passed

17 stars

1 watchers

snakemake-workflows

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

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Updated: 2026-10-09 Release: v3.1.2formatting: passedlinting: passed

373 stars

12 watchers

TRON-Bioinformatics

oblx

Reproducible generation of references and resources for next generation sequencing pipelines.

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Updated: 2026-10-08 Release: v2.0.2formatting: passedlinting: passed

7 stars

0 watchers

FilippoGas

GeneProgramsProfiler

Characterize cell type specific gene program deregulations from scRNAseq datasets.

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Updated: 2026-10-07 Release: v1.1.0formatting: passedlinting: passed

2 stars

0 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

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Updated: 2026-10-07 Release: v1.8.2formatting: passedlinting: passed

1 stars

1 watchers

modelblocks-org

module_powerplants

Harmonised global powerplant data at any resolution 🏭⚡

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Updated: 2026-10-05 Release: v0.1.2formatting: passedlinting: passed

1 stars

2 watchers

modelblocks-org

module_geo_boundaries

Custom-made geopolitical boundary datasets for energy systems modelling 🌎

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Updated: 2026-10-05 Release: v1.0.2formatting: passedlinting: passed

5 stars

2 watchers

SiYangming

nanoseq.smk

Snakemake Direct RNA-seq (DRS) workflow from bioskills modules; no ORF prediction

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Updated: 2026-10-05 Release: v1.0.0formatting: passedlinting: passed

0 stars

0 watchers

modelblocks-org

module_euro_gas_grid

A module to create disaggregated gas grid networks and H2 retrofits for European countries.

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Updated: 2026-10-05 Release: v0.2.0formatting: passedlinting: passed

0 stars

0 watchers

SiYangming

isoseq.smk

No description available.

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Updated: 2026-10-05 Release: v1.0.0formatting: passedlinting: passed

0 stars

0 watchers

SiYangming

riboseq.smk

Snakemake workflow for Ribo-seq (RPFs + Totals + Downstream)

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Updated: 2026-10-03 Release: v1.0.0formatting: passedlinting: passed

0 stars

0 watchers