Top workflows by tests

MPUSP

snakemake-assembly-postprocessing

A Snakemake workflow for the post-processing of microbial genome assemblies.

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Updated: 2026-04-22 Release: v1.3.0formatting: passedlinting: passed

1 stars

0 watchers

modelblocks-org

module_euro_gas_grid

A module to create disaggregated gas grid networks and H2 retrofits for European countries.

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Updated: 2026-04-17 Release: v0.1.1formatting: passedlinting: passed

0 stars

0 watchers

DavideBrex

SpikeFlow

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalizatio…

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Updated: 2026-04-11 Release: v1.3.2formatting: passedlinting: passed

14 stars

1 watchers

lauralaiton

x

No description available.

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Updated: 2026-04-10 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

star-arriba-fusion-calling

A standardized snakemake workflow to map RNAseq reads with star and call fusions on the resulting al…

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Updated: 2026-04-09 Release: v1.0.2formatting: passedlinting: passed

0 stars

0 watchers

liezeltamon

feature-module-reduction

Snakemake pipeline using Bashford-Rogers-lab/vdjremix R package

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Updated: 2026-04-07 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

boulardlab

3t-seq

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

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Updated: 2026-04-07 Release: v1.1.0formatting: passedlinting: passed

8 stars

1 watchers

MPUSP

snakemake-bacterial-riboseq

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

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Updated: 2026-04-07 Release: v1.6.0formatting: passedlinting: passed

5 stars

1 watchers

rglez

bflow-smk

Snakemake workflow to run BBFlow

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Updated: 2026-04-05 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

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Updated: 2026-04-04 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

modelblocks-org

module_co2stop_cdr

A module to aggregate European CDR potential from the CO2Stop dataset into flexible spatial resoluti…

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Updated: 2026-04-03 Release: v0.1.3formatting: passedlinting: passed

0 stars

0 watchers

JAlvarezJarreta

community_gff3_validation

No description available.

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Updated: 2026-04-01 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

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Updated: 2026-03-30 Release: v1.6.1formatting: passedlinting: passed

1 stars

1 watchers

snakemake-workflows

snakemake-workflow-template

A template for standard compliant snakemake-workflows

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Updated: 2026-03-27 Release: v1.3.0formatting: passedlinting: passed

126 stars

1 watchers

MPUSP

snakemake-ont-bacterial-variants

A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-rea…

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Updated: 2026-03-24 Release: v1.1.1formatting: passedlinting: passed

7 stars

2 watchers