Top workflows by tests
ziyaipek
No description available.
Updated: 2025-10-17 Release: Noneformatting: passedlinting: passed
snakemake-workflows
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Updated: 2025-10-16 Release: v3.0.0formatting: passedlinting: passed
snakemake-workflows
A Snakemake workflow for counting single cell RNAseq (scRNA-seq) data with Cell Ranger (Cell Ranger …
Updated: 2025-10-14 Release: v1.0.1formatting: passedlinting: passed
snakemake-workflows
Generic, uncertainty aware, parameter free effect size estimation
Updated: 2025-10-10 Release: v1.0.0formatting: passedlinting: passed
niekwit
Snakemake workflow for small RNA-seq analysis
Updated: 2025-10-10 Release: Noneformatting: passedlinting: passed
calliope-project
A module to create arbitrary regional boundary datasets for energy systems modelling
Updated: 2025-10-07 Release: v0.1.6formatting: passedlinting: passed
tucca-cellag
TUCCA’s RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment An…
Updated: 2025-10-02 Release: v1.0.0formatting: passedlinting: passed
MPUSP
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
Updated: 2025-09-25 Release: v1.4.1formatting: passedlinting: passed
mdondrup
No description available.
Updated: 2025-09-18 Release: Noneformatting: passedlinting: passed
mdondrup
No description available.
Updated: 2025-09-16 Release: Noneformatting: passedlinting: passed
zavolanlab
Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…
Updated: 2025-09-16 Release: v0.10.0formatting: passedlinting: passed
snakemake-workflows
RNA-seq workflow using STAR and DESeq2
Updated: 2025-09-14 Release: v3.1.0formatting: passedlinting: passed
MPUSP
A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.
Updated: 2025-09-12 Release: v1.4.0formatting: passedlinting: passed
KasperSkytte
Simple snakemake workflow based on the usearch11 SOP
Updated: 2025-09-05 Release: v1.1.2formatting: passedlinting: passed
EloiseIsobelPearce
During my time at Esox Biologics, I became confident using Snakemake to create streamlined MAG-assem…
Updated: 2025-09-04 Release: Noneformatting: passedlinting: passed