Top workflows by tests

tdayris

fair_macs2_calling

Snakemake workflow used to call peaks with Macs2

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Updated: 2025-03-07 Release: 3.2.2formatting: passedlinting: passed

0 stars

1 watchers

tdayris

fair_genome_indexer

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…

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Updated: 2025-03-07 Release: 3.9.7formatting: passedlinting: passed

0 stars

1 watchers

snakemake-workflows

dna-seq-mtb

A flavor of https://github.com/snakemake-workflows/dna-seq-varlociraptor preconfigured for molecular…

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Updated: 2025-03-06 Release: v1.10.0formatting: passedlinting: passed

4 stars

2 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2025-02-26 Release: v0.4.6formatting: passedlinting: passed

4 stars

2 watchers

SchlossLab

mikropml-snakemake-workflow

Snakemake template for building reusable and scalable machine learning pipelines with mikropml

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Updated: 2025-02-26 Release: v1.3.0formatting: passedlinting: passed

12 stars

7 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2025-02-20 Release: v1.11.7formatting: passedlinting: passed

12 stars

1 watchers

dlaehnemann

create-ecdna-testing-data

A Snakemake workflow for creating testing data for ecDNA analysis workflows: long reads (Nanopore wi…

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Updated: 2025-02-12 Release: v1.0.0formatting: passedlinting: passed

0 stars

1 watchers

DavideBrex

SpikeFlow

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalizatio…

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Updated: 2025-02-12 Release: v1.3.1formatting: passedlinting: passed

11 stars

1 watchers

IKIM-Essen

metagenomics_res

No description available.

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Updated: 2025-02-10 Release: Noneformatting: passedlinting: passed

1 stars

1 watchers

tdayris

fair_rnaseq_salmon_quant

Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon

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Updated: 2025-02-05 Release: 1.3.1formatting: passedlinting: passed

0 stars

1 watchers

MPUSP

snakemake-bacterial-riboseq

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

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Updated: 2025-02-02 Release: v1.4.0formatting: passedlinting: passed

2 stars

1 watchers

MPUSP

snakemake-ms-proteomics

Pipeline for automatic processing and quality control of mass spectrometry data

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Updated: 2025-01-30 Release: v1.0.0formatting: passedlinting: passed

4 stars

1 watchers

MPUSP

snakemake-ont-bacterial-variants

A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-rea…

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Updated: 2025-01-26 Release: v1.1.0formatting: passedlinting: passed

4 stars

2 watchers

MPUSP

snakemake-crispr-guides

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

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Updated: 2024-12-16 Release: v1.4.0formatting: passedlinting: passed

4 stars

0 watchers

boulardlab

3t-seq

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

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Updated: 2024-11-28 Release: v1.1.0formatting: passedlinting: passed

5 stars

1 watchers