Top workflows by tests
tucca-cellag
[UNDER-CONSTRUCTION] TUCCA’s RNA-Seq Workflow for Cellular Agriculture Projects
Updated: 2025-05-23 Release: Noneformatting: passedlinting: passed
snakemake-workflows
A template for standard compliant snakemake-workflows
Updated: 2025-05-17 Release: Noneformatting: passedlinting: passed
StergachisLab
Pipeline for MAS-Seq processing
Updated: 2025-05-15 Release: 1.0.0formatting: passedlinting: passed
kircherlab
With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…
Updated: 2025-05-15 Release: v0.5.3formatting: passedlinting: passed
metagenome-atlas
No description available.
Updated: 2025-05-14 Release: Noneformatting: passedlinting: passed
calliope-project
No description available.
Updated: 2025-05-12 Release: v0.1.0formatting: passedlinting: passed
calliope-project
A module to create arbitrary regional boundary datasets for energy systems modelling
Updated: 2025-05-12 Release: v0.1.2formatting: passedlinting: passed
dlaehnemann
snakemake workflow to determine conservative fold changes between transcriptomic samples when no bio…
Updated: 2025-05-02 Release: v1.5.1formatting: passedlinting: passed
DavideBrex
Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalizatio…
Updated: 2025-04-22 Release: v1.3.1formatting: passedlinting: passed
zavolanlab
The Zavolab Automated RNA-seq Pipeline
Updated: 2025-04-22 Release: v1.0.0formatting: passedlinting: passed
snakemake-workflows
A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…
Updated: 2025-04-15 Release: v1.12.2formatting: passedlinting: passed
dbespiatykh
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC…
Updated: 2025-03-13 Release: v1.0.5formatting: passedlinting: passed
tdayris
Snakemake workflow used to call peaks with Macs2
Updated: 2025-03-07 Release: 3.2.2formatting: passedlinting: passed
tdayris
Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…
Updated: 2025-03-07 Release: 3.9.7formatting: passedlinting: passed
SchlossLab
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
Updated: 2025-02-26 Release: v1.3.0formatting: passedlinting: passed