Top workflows by tests

StergachisLab

Pipeline for MAS-Seq processing


Updated: 2025-04-22 Release: v1.0.0formatting: passedlinting: passed

DavideBrex

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalizatio…


Updated: 2025-04-22 Release: v1.3.1formatting: passedlinting: passed

zavolanlab

The Zavolab Automated RNA-seq Pipeline


Updated: 2025-04-22 Release: v1.0.0formatting: passedlinting: passed

snakemake-workflows

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…


Updated: 2025-04-15 Release: v1.12.2formatting: passedlinting: passed

kircherlab

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…


Updated: 2025-04-10 Release: v0.5.0formatting: passedlinting: passed

calliope-project

A module to create arbitrary regional boundary datasets for energy systems modelling


Updated: 2025-04-08 Release: v0.1.2formatting: passedlinting: passed

dlaehnemann

snakemake workflow to determine conservative fold changes between transcriptomic samples when no bio…


Updated: 2025-04-03 Release: v1.5.0formatting: passedlinting: passed

durr1602

Snakemake pipeline to analyze demultiplexed sequencing data of DMS experiment, produce diagnostics p…


Updated: 2025-03-27 Release: v1.0.1formatting: passedlinting: passed

dbespiatykh

A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC…


Updated: 2025-03-13 Release: v1.0.5formatting: passedlinting: passed

tdayris

Snakemake workflow used to call peaks with Macs2


Updated: 2025-03-07 Release: 3.2.2formatting: passedlinting: passed

tdayris

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…


Updated: 2025-03-07 Release: 3.9.7formatting: passedlinting: passed

SchlossLab

Snakemake template for building reusable and scalable machine learning pipelines with mikropml


Updated: 2025-02-26 Release: v1.3.0formatting: passedlinting: passed

dlaehnemann

A Snakemake workflow for creating testing data for ecDNA analysis workflows: long reads (Nanopore wi…


Updated: 2025-02-12 Release: v1.0.0formatting: passedlinting: passed

IKIM-Essen

No description available.


Updated: 2025-02-10 Release: Noneformatting: passedlinting: passed

tdayris

Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon


Updated: 2025-02-05 Release: 1.3.1formatting: passedlinting: passed