Top workflows by tests

tmweiskittel

tmwalign

No description available.

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Updated: 2026-03-11 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

read-alignment-pangenome

Standardized snakemake workflow for aligning sequencing reads to a pangenome.

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Updated: 2026-03-10 Release: Noneformatting: passedlinting: passed

0 stars

1 watchers

vojdam

idat_to_graph

A Snakemake workflow for creating graph visualizations of DNA methylation data.

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Updated: 2026-03-09 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

thomasmulvaney

snakemake-gromacs-workflow

No description available.

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Updated: 2026-03-09 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2026-03-06 Release: v6.6.0formatting: passedlinting: passed

88 stars

6 watchers

MPUSP

snakemake-crispr-guides

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

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Updated: 2026-03-06 Release: v1.6.1formatting: passedlinting: passed

8 stars

1 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2026-03-03 Release: v0.1.9formatting: passedlinting: passed

1 stars

2 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

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Updated: 2026-02-21 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

LiaOb21

FSP_assembly_benchmarking

No description available.

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Updated: 2026-02-13 Release: v_3.0.0formatting: passedlinting: passed

1 stars

0 watchers

MPUSP

snakemake-bacterial-riboseq

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

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Updated: 2026-02-12 Release: v1.5.0formatting: passedlinting: passed

5 stars

1 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2026-02-11 Release: v0.6.0formatting: passedlinting: passed

13 stars

1 watchers

snakemake-workflows

star-arriba-fusion-calling

A standardized snakemake workflow to map RNAseq reads with star and call fusions on the resulting al…

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Updated: 2026-02-11 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

microsatellite-instability-detection-with-msisensor-pro

Best practices snakemake workflow for microsatellite instability (MSI) detection with msisensor-pro.

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Updated: 2026-02-10 Release: v1.1.3formatting: passedlinting: passed

2 stars

1 watchers

calliope-project

module_co2stop_cdr

A module to aggregate CDR potential from the CO2Stop dataset into flexible spatial resolutions

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Updated: 2026-01-31 Release: v0.1.2formatting: passedlinting: passed

0 stars

0 watchers

zavolanlab

zarp

The Zavolab Automated RNA-seq Pipeline

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Updated: 2026-01-29 Release: v1.0.0formatting: passedlinting: passed

35 stars

6 watchers