Top workflows by tests

tucca-cellag

tucca-rna-seq

TUCCA’s RNA-Seq Workflow for Differential Expression and Pathway Enrichment Analysis

---

Updated: 2025-09-25 Release: v0.9.0formatting: passedlinting: passed

18 stars

13 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

---

Updated: 2025-09-25 Release: v1.4.1formatting: passedlinting: passed

1 stars

1 watchers

mdondrup

gromacs_workflow

No description available.

---

Updated: 2025-09-18 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

mdondrup

sealice_assemblies

No description available.

---

Updated: 2025-09-16 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

---

Updated: 2025-09-16 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

snakemake-workflows

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

---

Updated: 2025-09-14 Release: v3.1.0formatting: passedlinting: passed

346 stars

12 watchers

MPUSP

snakemake-ont-basecalling

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

---

Updated: 2025-09-12 Release: v1.4.0formatting: passedlinting: passed

4 stars

2 watchers

KasperSkytte

snakemake_usearch

Simple snakemake workflow based on the usearch11 SOP

---

Updated: 2025-09-05 Release: v1.1.2formatting: passedlinting: passed

0 stars

1 watchers

EloiseIsobelPearce

snakemake-example

During my time at Esox Biologics, I became confident using Snakemake to create streamlined MAG-assem…

---

Updated: 2025-09-04 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

---

Updated: 2025-09-02 Release: v0.1.4formatting: passedlinting: passed

0 stars

2 watchers

vjcitn

rnaseqSnake

demonstration snakemake repo for use with rnaseqGene workflow of Bioconductor

---

Updated: 2025-09-01 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

IKIM-Essen

metagenomics_res

No description available.

---

Updated: 2025-08-28 Release: Noneformatting: passedlinting: passed

1 stars

1 watchers

TidballLab

SNP-Cas13d-Selector

No description available.

---

Updated: 2025-08-21 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

delpropo

TidballLab-SNP-Cas13d-Selector

A flexible pipeline for identifying heterozygous SNPs in CDS and 3′ UTR regions and selecting the op…

---

Updated: 2025-08-21 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

IKIM-Essen

QC_pre_NextSeq

Workflow for short quality control of MiSeq sequencing data before sequencing on high throughput dev…

---

Updated: 2025-08-14 Release: Noneformatting: passedlinting: passed

0 stars

1 watchers