Top workflows by tests

snakemake-workflows

snakemake-workflow-template

A template for standard compliant snakemake-workflows

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Updated: 2026-03-27 Release: v1.3.0formatting: passedlinting: passed

126 stars

1 watchers

MPUSP

snakemake-ont-bacterial-variants

A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-rea…

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Updated: 2026-03-24 Release: v1.1.1formatting: passedlinting: passed

7 stars

2 watchers

MPUSP

snakemake-ont-basecalling

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

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Updated: 2026-03-24 Release: v1.6.0formatting: passedlinting: passed

5 stars

2 watchers

KasperSkytte

snakemake_usearch

Simple snakemake workflow based on the usearch11 SOP

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Updated: 2026-03-24 Release: v1.2.1formatting: passedlinting: passed

0 stars

1 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

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Updated: 2026-03-22 Release: v1.6.0formatting: passedlinting: passed

1 stars

1 watchers

sgallegosperez8

practice

No description available.

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Updated: 2026-03-22 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-crispr-guides

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

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Updated: 2026-03-20 Release: v1.7.0formatting: passedlinting: passed

8 stars

1 watchers

calliope-project

module_euro_gas_grid

A module to create disaggregated gas grid networks and H2 retrofits for European countries.

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Updated: 2026-03-20 Release: v0.1.0formatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

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Updated: 2026-03-19 Release: v4.0.0formatting: passedlinting: passed

68 stars

3 watchers

MethyleneBlues

Snake

No description available.

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Updated: 2026-03-17 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

LiaOb21

FSP_assembly_benchmarking

No description available.

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Updated: 2026-03-13 Release: v_3.0.0formatting: passedlinting: passed

1 stars

0 watchers

thomasmulvaney

snakemake-gromacs-workflow

No description available.

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Updated: 2026-03-12 Release: Noneformatting: passedlinting: passed

1 stars

1 watchers

snakemake-workflows

read-alignment-pangenome

Standardized snakemake workflow for aligning sequencing reads to a pangenome.

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Updated: 2026-03-10 Release: Noneformatting: passedlinting: passed

0 stars

1 watchers

vojdam

idat_to_graph

A Snakemake workflow for creating graph visualizations of DNA methylation data.

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Updated: 2026-03-09 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2026-03-03 Release: v0.1.9formatting: passedlinting: passed

1 stars

2 watchers