Top workflows by update

mkrg01

genome_assembly_pipeline

An integrated pipeline for genome assembly and gene annotation

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Updated: 2025-08-18 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

FeelLiao

rna-seq-std

RNA-Seq analysis workflow based on snakemake

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Updated: 2025-08-16 Release: v2.0.1formatting: failedlinting: passed

3 stars

1 watchers

magwenelab

WeavePop

Workflow to Explore and Analyze Variants of Eukaryotic Populations

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Updated: 2025-08-14 Release: Noneformatting: failedlinting: failed

0 stars

2 watchers

nezapajek

project-tobamo

Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…

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Updated: 2025-08-14 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers

IKIM-Essen

QC_pre_NextSeq

Workflow for short quality control of MiSeq sequencing data before sequencing on high throughput dev…

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Updated: 2025-08-14 Release: Noneformatting: passedlinting: passed

0 stars

1 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2025-08-13 Release: Noneformatting: failedlinting: failed

7 stars

4 watchers

sims-lab

snakemake-cncb-genetic-demultiplexing

No description available.

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Updated: 2025-08-13 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

snakemake-workflows

rna-longseq-de-isoform

long read differential expression analysis and splice variant analysis

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Updated: 2025-08-13 Release: v2.3.0formatting: passedlinting: failed

3 stars

3 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

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Updated: 2025-08-13 Release: v0.9.1formatting: passedlinting: passed

6 stars

4 watchers

usnistgov

defrabb

Genome In A Bottle Development Framework for Assembly Based Benchmarks

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Updated: 2025-08-12 Release: Noneformatting: failedlinting: failed

7 stars

1 watchers

durr1602

gyoza

Snakemake pipeline to analyze demultiplexed sequencing data of DMS experiment, produce diagnostics p…

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Updated: 2025-08-12 Release: v1.1.6formatting: failedlinting: passed

1 stars

1 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

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Updated: 2025-08-12 Release: v1.2.0formatting: passedlinting: passed

1 stars

1 watchers

epigen

atacseq_pipeline

Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Mo…

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Updated: 2025-08-11 Release: v2.1.0formatting: failedlinting: failed

59 stars

3 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2025-08-11 Release: v0.1.4formatting: passedlinting: passed

0 stars

2 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2025-08-09 Release: Noneformatting: passedlinting: passed

7 stars

5 watchers