Top workflows by update

sims-lab

snakemake-cncb-genetic-demultiplexing

No description available.

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Updated: 2025-07-05 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

epigen

spilterlize_integrate

A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly v…

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Updated: 2025-07-04 Release: v3.0.2formatting: failedlinting: failed

19 stars

4 watchers

sims-lab

snakemake-cncb-index-ensembl-genome

No description available.

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Updated: 2025-07-04 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

epigen

dea_limma

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) a…

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Updated: 2025-07-03 Release: v2.1.3formatting: failedlinting: failed

28 stars

4 watchers

Phlya

distill-reorder-C

snakemake workflow to analyze Hi-C-like data for multiple versions of the reference genome

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Updated: 2025-07-03 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

durr1602

gyoza

Snakemake pipeline to analyze demultiplexed sequencing data of DMS experiment, produce diagnostics p…

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Updated: 2025-07-02 Release: v1.1.0formatting: failedlinting: passed

1 stars

1 watchers

epigen

enrichment_analysis

A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment …

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Updated: 2025-07-02 Release: v2.0.3formatting: failedlinting: failed

40 stars

2 watchers

epigen

unsupervised_analysis

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensio…

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Updated: 2025-07-02 Release: v3.0.3formatting: failedlinting: failed

30 stars

4 watchers

panta-123

moller-prompt-workflow

No description available.

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Updated: 2025-07-02 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

r1cheu

gnnotator

genome annotation workflow

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Updated: 2025-07-02 Release: Noneformatting: failedlinting: passed

0 stars

0 watchers

baerlachlan

smk-rnaseq-counts

Snakemake workflow for estimating read counts from RNA-seq data

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Updated: 2025-07-02 Release: v1.2.9formatting: failedlinting: failed

0 stars

1 watchers

tavareshugo

smk-indexer

Snakemake workflow for indexing reference genomes

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Updated: 2025-07-01 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

richardstoeckl

prokanota

prokanota - Flexible pipeline for prokaryotic annotation

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Updated: 2025-07-01 Release: 1.1.0formatting: failedlinting: failed

0 stars

1 watchers

SamBryce-Smith

LAPA_snakemake

Snakemake pipeline to run LAPA (UNDER CONSTRUCTION)

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Updated: 2025-07-01 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

tdayris

fair_genome_indexer

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…

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Updated: 2025-07-01 Release: 3.10.0formatting: passedlinting: passed

0 stars

1 watchers