Top workflows by update

fischuu

Pipeline-Holoruminant-Meta

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

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Updated: 2025-03-09 Release: 0.3formatting: failedlinting: failed

5 stars

3 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2025-03-09 Release: v5.14.0formatting: failedlinting: passed

83 stars

7 watchers

kevinrue

snakemake-cncb-ensembl-2024

No description available.

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Updated: 2025-03-07 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

tdayris

fair_macs2_calling

Snakemake workflow used to call peaks with Macs2

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Updated: 2025-03-07 Release: 3.2.2formatting: passedlinting: passed

0 stars

1 watchers

tdayris

fair_genome_indexer

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…

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Updated: 2025-03-07 Release: 3.9.7formatting: passedlinting: passed

0 stars

1 watchers

orthanq

orthanq-hla-quantification

A Snakemake workflow for typing and quantifying HLAs using Orthanq.

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Updated: 2025-03-07 Release: v1.0.2formatting: failedlinting: failed

0 stars

0 watchers

nate-d-olson

giab-stvar-curation-table

No description available.

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Updated: 2025-03-06 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2025-03-06 Release: Noneformatting: failedlinting: failed

2 stars

5 watchers

epigen

dea_limma

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) a…

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Updated: 2025-03-06 Release: v2.0.1formatting: failedlinting: failed

24 stars

4 watchers

snakemake-workflows

dna-seq-mtb

A flavor of https://github.com/snakemake-workflows/dna-seq-varlociraptor preconfigured for molecular…

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Updated: 2025-03-06 Release: v1.10.0formatting: passedlinting: passed

4 stars

2 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2025-03-05 Release: Noneformatting: failedlinting: failed

5 stars

4 watchers

abbyevewilliams

map-pipeline

A snakemake pipeline for mapping next generation sequencing reads from avian museum samples.

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Updated: 2025-03-05 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

usnistgov

defrabb

Genome In A Bottle Development Framework for Assembly Based Benchmarks

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Updated: 2025-03-05 Release: Noneformatting: passedlinting: failed

5 stars

1 watchers

semenko

serpent-methylation-pipeline

An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq…

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Updated: 2025-03-04 Release: Noneformatting: failedlinting: failed

8 stars

4 watchers

epigen

unsupervised_analysis

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensio…

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Updated: 2025-03-04 Release: v3.0.1formatting: failedlinting: failed

24 stars

4 watchers