Top workflows by update

davelunt

NemaTree

Analysis workflow for root-knot nematode rRNA

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Updated: 2026-09-05 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

snakemake-workflows

single-cell-counts-preprocessing

A standardised Snakemake workflow for preprocessing of single-cell RNAseq count data following singl…

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Updated: 2026-09-04 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

Yegberink

module_heat_rasters

No description available.

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Updated: 2026-09-04 Release: Noneformatting: failedlinting: passed

0 stars

0 watchers

daspacio9

pooledpremiumpcrpipeline2

A snakemake pipeline for multiplex sequencing using the Plasmidsaurus Premium PCR service

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Updated: 2026-09-03 Release: v4.0.2formatting: passedlinting: passed

6 stars

0 watchers

cbib

SpaceBlocks

No description available.

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Updated: 2026-09-03 Release: v0.3.0formatting: passedlinting: failed

4 stars

0 watchers

modelblocks-org

module_euro_building_heat

This module prepares time series of heat demand and heat supply technologies for buildings in Europ…

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Updated: 2026-09-03 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

SarahSaadain

pastForward

A Snakemake-based pipeline for processing and quality-controlling ancient and historical DNA data, i…

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Updated: 2026-09-03 Release: v2.1.0formatting: failedlinting: failed

3 stars

1 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2026-09-03 Release: v6.10.0formatting: passedlinting: failed

91 stars

6 watchers

AToL-Bioinformatics

genome-launcher-workflow

No description available.

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Updated: 2026-09-03 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

sneuensc

mapache

mapping pipeline for ancient DNA

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Updated: 2026-09-02 Release: v0.3.0formatting: failedlinting: failed

35 stars

5 watchers

MPUSP

snakemake-assembly-postprocessing

A Snakemake workflow for the post-processing of microbial genome assemblies.

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Updated: 2026-09-02 Release: v1.4.0formatting: passedlinting: passed

2 stars

1 watchers

gynecoloji

snakemake_ATACseq_spikein

Reproducible Snakemake workflow for spike-in–normalized ATAC-seq — concatenated-genome alignment, MA…

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Updated: 2026-08-30 Release: v1.4.6formatting: failedlinting: failed

2 stars

0 watchers

fischuu

Snakebite-Holoruminant-MetaG

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

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Updated: 2026-08-29 Release: 0.4.62formatting: failedlinting: failed

9 stars

3 watchers

FilippoGas

GeneProgramsProfiler

Characterize cell type specific gene program deregulations from scRNAseq datasets.

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Updated: 2026-08-28 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

tud-mchen6

module_gh2_prod

No description available.

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Updated: 2026-08-27 Release: Noneformatting: failedlinting: passed

0 stars

0 watchers