Top workflows by update

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

---

Updated: 2026-03-11 Release: Noneformatting: failedlinting: failed

6 stars

4 watchers

tmweiskittel

tmwalign

No description available.

---

Updated: 2026-03-11 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

---

Updated: 2026-03-11 Release: v1.15.0formatting: failedlinting: passed

13 stars

0 watchers

koesterlab

rossi-ips-dmr

Calling and plotting of differentially methylated regions between two or more biological samples in …

---

Updated: 2026-03-11 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

Bioinflows-Bioversity-CIAT

ont-target-dna-variant-calling

A reproducible Snakemake pipeline for variant calling from multiplexed ONT targeted sequencing data …

---

Updated: 2026-03-10 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

jsquaredosquared

novocraft-sv-benchmarking

Comparing performance of SV callers when using NovoAlign vs other aligners.

---

Updated: 2026-03-10 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

snakemake-workflows

read-alignment-pangenome

Standardized snakemake workflow for aligning sequencing reads to a pangenome.

---

Updated: 2026-03-10 Release: Noneformatting: passedlinting: passed

0 stars

1 watchers

regulatory-genomics

hic_sm

No description available.

---

Updated: 2026-03-10 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

vojdam

idat_to_graph

A Snakemake workflow for creating graph visualizations of DNA methylation data.

---

Updated: 2026-03-09 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

tucca-cellag

tucca-rna-seq

TUCCA’s RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment An…

---

Updated: 2026-03-09 Release: v1.0.1formatting: failedlinting: passed

19 stars

12 watchers

thomasmulvaney

snakemake-gromacs-workflow

No description available.

---

Updated: 2026-03-09 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

PathoGenOmics-Lab

VIPERA

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

---

Updated: 2026-03-09 Release: v1.3.1formatting: failedlinting: failed

8 stars

1 watchers

SarahSaadain

Single_Copy_Gene_Selector

This repository contains a Snakemake pipeline which can be used to determine the best SCGs for aDNA …

---

Updated: 2026-03-07 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

daspacio9

pooledpremiumpcrpipeline2

No description available.

---

Updated: 2026-03-06 Release: Noneformatting: failedlinting: failed

1 stars

0 watchers

nezapajek

project-tobamo

Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…

---

Updated: 2026-03-06 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers