Top workflows by update

FeelLiao

rna-seq-std

RNA-Seq analysis workflow based on snakemake

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Updated: 2025-04-04 Release: v1.1.0formatting: failedlinting: failed

1 stars

1 watchers

epigen

rnaseq_pipeline

RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

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Updated: 2025-04-04 Release: v1.0.0formatting: failedlinting: failed

4 stars

2 watchers

abbyevewilliams

map-pipeline

A snakemake pipeline for mapping next generation sequencing reads from avian museum samples.

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Updated: 2025-04-04 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

davelunt

mmseqs

snakemake workflow for mmseqs2

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Updated: 2025-04-04 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

open2c

distiller-sm

a Snakemake version of distiller - the Open2C Hi-C mapping workflow

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Updated: 2025-04-04 Release: Noneformatting: passedlinting: failed

4 stars

7 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2025-04-03 Release: v.1.0formatting: failedlinting: failed

3 stars

5 watchers

dlaehnemann

rna-seq-conservative-fold-change-without-replicates

snakemake workflow to determine conservative fold changes between transcriptomic samples when no bio…

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Updated: 2025-04-03 Release: v1.5.0formatting: passedlinting: passed

0 stars

1 watchers

Addimator

varlociraptor-copy-number-variants

No description available.

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Updated: 2025-04-03 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers

ncbench

ncbench-workflow

No description available.

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Updated: 2025-04-03 Release: v1.1.0formatting: passedlinting: failed

13 stars

5 watchers

fischuu

Pipeline-Holoruminant-Meta

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

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Updated: 2025-04-03 Release: 0.3formatting: failedlinting: failed

6 stars

3 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2025-04-03 Release: v1.12.0formatting: passedlinting: passed

12 stars

1 watchers

epigen

fetch_ngs

Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.

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Updated: 2025-04-03 Release: v1.0.5formatting: failedlinting: failed

7 stars

1 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2025-04-03 Release: v0.1.2formatting: passedlinting: passed

0 stars

2 watchers

niekwit

damid-seq

Snakemake workflow for DamID-Seq analysis

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Updated: 2025-04-03 Release: v0.5.0formatting: failedlinting: failed

3 stars

1 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2025-04-03 Release: v0.4.7formatting: passedlinting: passed

4 stars

1 watchers