Top workflows by update

niekwit

gps-orfeome

Snakemake workflow for GPS-ORFeome screens

---

Updated: 2025-05-25 Release: 0.6.3formatting: passedlinting: failed

0 stars

1 watchers

tucca-cellag

tucca-rna-seq

[UNDER-CONSTRUCTION] TUCCA’s RNA-Seq Workflow for Cellular Agriculture Projects

---

Updated: 2025-05-23 Release: Noneformatting: passedlinting: passed

1 stars

1 watchers

aekrylova

scPASU

No description available.

---

Updated: 2025-05-23 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

semenko

serpent-methylation-pipeline

An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq…

---

Updated: 2025-05-23 Release: Noneformatting: failedlinting: failed

8 stars

4 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

---

Updated: 2025-05-23 Release: v5.16.2formatting: failedlinting: failed

86 stars

7 watchers

snakemake-workflows

snakemake-workflow-template

A template for standard compliant snakemake-workflows

---

Updated: 2025-05-17 Release: Noneformatting: passedlinting: passed

96 stars

1 watchers

orthanq

orthanq-hla-quantification

A Snakemake workflow for typing and quantifying HLAs using Orthanq.

---

Updated: 2025-05-16 Release: v1.0.7formatting: passedlinting: failed

0 stars

0 watchers

shahcompbio

bambu-smk

Snakemake workflow for transcript assembly with Bambu

---

Updated: 2025-05-16 Release: v0.0.3-betaformatting: failedlinting: failed

0 stars

0 watchers

durr1602

gyoza

Snakemake pipeline to analyze demultiplexed sequencing data of DMS experiment, produce diagnostics p…

---

Updated: 2025-05-15 Release: v1.0.3formatting: failedlinting: passed

1 stars

1 watchers

snakemake-workflows

effect-size-estimation

Generic, uncertainty aware, parameter free effect size estimation

---

Updated: 2025-05-15 Release: Noneformatting: failedlinting: passed

0 stars

1 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

---

Updated: 2025-05-15 Release: 1.0.0formatting: passedlinting: passed

4 stars

5 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

---

Updated: 2025-05-15 Release: v0.5.3formatting: passedlinting: passed

5 stars

1 watchers

LiaOb21

colora

A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemb…

---

Updated: 2025-05-14 Release: Colora_v1.1.1formatting: failedlinting: failed

18 stars

3 watchers

metagenome-atlas

metagenome_instrain

No description available.

---

Updated: 2025-05-14 Release: Noneformatting: passedlinting: passed

0 stars

1 watchers

niekwit

rna-seq-salmon-deseq2

Snakemake workflow for RNA-Seq differential transcript analysis using Salmon/Deseq2

---

Updated: 2025-05-14 Release: v0.7.2formatting: failedlinting: failed

5 stars

1 watchers