Top workflows by update

aryazand

call_tss

a snakemake workflow that uses BAM/CRAM files from nascent RNA sequences to call Transcription Start…

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Updated: 2026-02-16 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

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Updated: 2026-02-15 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

cecivale

snakemake-phylo-beast2

Snakemake workflow to run beast2 analysis with genetic sequences

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Updated: 2026-02-14 Release: v0.1formatting: failedlinting: failed

0 stars

1 watchers

daspacio9

pooledpremiumpcrpipeline2

No description available.

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Updated: 2026-02-14 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

scholl-lab

sm-calling

No description available.

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Updated: 2026-02-13 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2026-02-13 Release: Noneformatting: failedlinting: failed

6 stars

4 watchers

snakemake-workflows

dna-seq-mtb

A flavor of https://github.com/snakemake-workflows/dna-seq-varlociraptor preconfigured for molecular…

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Updated: 2026-02-13 Release: v1.12.1formatting: passedlinting: failed

4 stars

1 watchers

niekwit

smallRNA-seq

Snakemake workflow for small RNA-seq analysis

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Updated: 2026-02-13 Release: Noneformatting: failedlinting: failed

1 stars

0 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2026-02-13 Release: v6.4.1formatting: failedlinting: passed

88 stars

6 watchers

snakemake-workflows

rna-longseq-de-isoform

long read differential expression analysis and splice variant analysis

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Updated: 2026-02-13 Release: v2.5.0formatting: passedlinting: failed

3 stars

1 watchers

LiaOb21

FSP_assembly_benchmarking

No description available.

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Updated: 2026-02-13 Release: v_3.0.0formatting: passedlinting: passed

1 stars

0 watchers

aryazand

fastq-process-align

snakemake based pipeline for processing and mapping fastq files

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Updated: 2026-02-12 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2026-02-12 Release: Noneformatting: failedlinting: passed

8 stars

5 watchers

niekwit

atac-seq

No description available.

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Updated: 2026-02-12 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

MPUSP

snakemake-bacterial-riboseq

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

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Updated: 2026-02-12 Release: v1.5.0formatting: passedlinting: passed

5 stars

1 watchers