Top workflows by update
snakemake-workflows
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…
Updated: 2025-12-13 Release: v6.2.1formatting: failedlinting: passed
StergachisLab
Pipeline for MAS-Seq processing
Updated: 2025-12-13 Release: Noneformatting: failedlinting: passed
GArcho44
No description available.
Updated: 2025-12-12 Release: Noneformatting: failedlinting: failed
regulatory-genomics
MPUSP
A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.
Updated: 2025-12-12 Release: v1.4.2formatting: passedlinting: passed
ChaissonLab
Count gene duplications.
Updated: 2025-12-12 Release: v1.3.3formatting: failedlinting: failed
fcaretti
A Snakemake workflow to call variants (SNPs) from bulk RNA-seq samples
Updated: 2025-12-11 Release: v1.0.0formatting: passedlinting: passed
niekwit
Snakemake workflow for small RNA-seq analysis
Updated: 2025-12-11 Release: Noneformatting: failedlinting: failed
fischuu
Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…
Updated: 2025-12-11 Release: 0.4.32formatting: failedlinting: failed
rabiafidan
Formalin artefact filtering of tumour sample VCF files
Updated: 2025-12-10 Release: v1.1formatting: failedlinting: failed
MPUSP
A Snakemake workflow for the post-processing of microbial genome assemblies.
Updated: 2025-12-10 Release: v1.1.0formatting: passedlinting: passed
snakemake-workflows
long read differential expression analysis and splice variant analysis
Updated: 2025-12-09 Release: v2.5.0formatting: passedlinting: failed
LiaOb21
No description available.
Updated: 2025-12-09 Release: v_2.0.0formatting: passedlinting: passed
Phlya
Map insertions of transopable elements using tagmentation
Updated: 2025-12-09 Release: Noneformatting: passedlinting: failed
ncbench
No description available.
Updated: 2025-12-09 Release: v1.3.0formatting: passedlinting: failed