Top workflows by update

epigen

scrnaseq_processing_seurat

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq d…

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Updated: 2025-09-05 Release: v3.0.5formatting: failedlinting: failed

27 stars

5 watchers

epigen

mixscape_seurat

A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal…

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Updated: 2025-09-05 Release: v2.0.2formatting: failedlinting: failed

24 stars

4 watchers

epigen

dea_seurat

A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (…

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Updated: 2025-09-05 Release: v2.0.3formatting: failedlinting: failed

25 stars

4 watchers

snakemake-workflows

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

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Updated: 2025-09-05 Release: v3.0.1formatting: passedlinting: passed

345 stars

12 watchers

KasperSkytte

snakemake_usearch

Simple snakemake workflow based on the usearch11 SOP

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Updated: 2025-09-05 Release: v1.1.2formatting: passedlinting: passed

0 stars

1 watchers

EloiseIsobelPearce

snakemake-example

During my time at Esox Biologics, I became confident using Snakemake to create streamlined MAG-assem…

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Updated: 2025-09-04 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

epigen

atacseq_pipeline

Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Mo…

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Updated: 2025-09-04 Release: v2.1.0formatting: failedlinting: failed

62 stars

3 watchers

fischuu

Pipeline-Holoruminant-Meta

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

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Updated: 2025-09-04 Release: 0.3formatting: failedlinting: failed

6 stars

3 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2025-09-03 Release: Noneformatting: failedlinting: failed

7 stars

4 watchers

nezapajek

project-tobamo

Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…

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Updated: 2025-09-03 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers

harrymatthews50

sankemake-containerisation-test

No description available.

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Updated: 2025-09-03 Release: Noneformatting: failedlinting: passed

0 stars

0 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2025-09-02 Release: v0.1.4formatting: passedlinting: passed

0 stars

2 watchers

snakemake-workflows

rna-longseq-de-isoform

long read differential expression analysis and splice variant analysis

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Updated: 2025-09-02 Release: v2.4.0formatting: passedlinting: failed

4 stars

3 watchers

niekwit

rna-seq-star-tetranscripts

Snakemake workflow for transposable element RNA-Seq using TEtranscripts

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Updated: 2025-09-01 Release: v0.4.0formatting: failedlinting: failed

4 stars

1 watchers

vjcitn

rnaseqSnake

demonstration snakemake repo for use with rnaseqGene workflow of Bioconductor

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Updated: 2025-09-01 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers