Top workflows by update

open2c

distiller-sm

a Snakemake version of distiller - the Open2C Hi-C mapping workflow

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Updated: 2025-04-27 Release: Noneformatting: passedlinting: failed

4 stars

7 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2025-04-25 Release: Noneformatting: failedlinting: failed

6 stars

4 watchers

semenko

serpent-methylation-pipeline

An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq…

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Updated: 2025-04-25 Release: Noneformatting: failedlinting: failed

8 stars

4 watchers

cbg-ethz

V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

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Updated: 2025-04-25 Release: v3.0.0.pre1formatting: passedlinting: failed

136 stars

9 watchers

AntonJMLarsson

lustre_snakemake_pipeline

A snakemake workflow for analyzing LUSTRE data.

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Updated: 2025-04-24 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

snakemake-workflows

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

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Updated: 2025-04-24 Release: v2.11.0formatting: failedlinting: passed

68 stars

4 watchers

ncbench

ncbench-workflow

No description available.

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Updated: 2025-04-23 Release: v1.2.0formatting: passedlinting: failed

13 stars

5 watchers

niekwit

crispr-screens

Snakemake workflow for CRISPR-Cas9 screen analysis

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Updated: 2025-04-23 Release: v0.8.1formatting: failedlinting: failed

5 stars

2 watchers

FeelLiao

rna-seq-std

RNA-Seq analysis workflow based on snakemake

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Updated: 2025-04-23 Release: v2.0.0formatting: failedlinting: passed

2 stars

1 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2025-04-22 Release: v1.0.0formatting: passedlinting: passed

4 stars

5 watchers

DavideBrex

SpikeFlow

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalizatio…

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Updated: 2025-04-22 Release: v1.3.1formatting: passedlinting: passed

13 stars

1 watchers

richardstoeckl

QCforSeqCode

Snakemake Pipeline to check the requirements for a prokaryotic assembly to be included in the SeqCod…

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Updated: 2025-04-22 Release: v1.1.0formatting: failedlinting: failed

3 stars

1 watchers

zavolanlab

zarp

The Zavolab Automated RNA-seq Pipeline

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Updated: 2025-04-22 Release: v1.0.0formatting: passedlinting: passed

35 stars

6 watchers

ethan-baldwin

hybpiper_astral_pipeline

A snakemake pipeline to use hybpiper and ASTRAL to get a species tree from a set of reads.

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Updated: 2025-04-20 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

votti

snakemake-demo

A demo for snakemake exmaple for the bionformatic meeting

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Updated: 2025-04-17 Release: Noneformatting: failedlinting: passed

0 stars

1 watchers