Top workflows by update
nezapajek
Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…
Updated: 2025-11-28 Release: Noneformatting: passedlinting: failed
dlaehnemann
A standardized snakemake workflow for annotating variants with CADD scores and filtering non-coding …
Updated: 2025-11-28 Release: Noneformatting: passedlinting: passed
MPUSP
A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.
Updated: 2025-11-28 Release: v1.5.0formatting: passedlinting: passed
fischuu
Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…
Updated: 2025-11-28 Release: 0.4.21formatting: failedlinting: failed
nismod
Open-data Global Infrastructure Risk/Resilience Analysis
Updated: 2025-11-27 Release: v0.4.0-alphaformatting: failedlinting: failed
niekwit
Snakemake workflow for small RNA-seq analysis
Updated: 2025-11-27 Release: Noneformatting: failedlinting: failed
koesterlab
Calling and plotting of differentially methylated regions between two or more biological samples in …
Updated: 2025-11-26 Release: Noneformatting: failedlinting: failed
snakemake-workflows
long read differential expression analysis and splice variant analysis
Updated: 2025-11-26 Release: v2.4.2formatting: passedlinting: failed
tucca-cellag
TUCCA’s RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment An…
Updated: 2025-11-26 Release: v1.0.0formatting: passedlinting: passed
epigen
Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Mo…
Updated: 2025-11-25 Release: v2.1.0formatting: failedlinting: failed
nikostr
Snakemake module for read mapping using BWA-MEME, pbmm2 or minimap2. Experimental.
Updated: 2025-11-25 Release: v0.6formatting: passedlinting: failed
epigen
A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NG…
Updated: 2025-11-25 Release: v2.2.1formatting: failedlinting: failed
snakemake-workflows
A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…
Updated: 2025-11-25 Release: v1.14.1formatting: failedlinting: passed
GuttmanLab
Pipeline to process sequencing reads from a ChIP-DIP experiment
Updated: 2025-11-25 Release: v3.0.0formatting: failedlinting: failed
PathoGenOmics-Lab
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
Updated: 2025-11-24 Release: v1.3.0formatting: failedlinting: failed