Top workflows by update
nodrogluap
Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake
Updated: 2025-07-26 Release: Noneformatting: failedlinting: failed
snakemake-workflows
A template for standard compliant snakemake-workflows
Updated: 2025-07-26 Release: Noneformatting: passedlinting: passed
StergachisLab
Pipeline for MAS-Seq processing
Updated: 2025-07-25 Release: Noneformatting: passedlinting: passed
durr1602
Snakemake pipeline to analyze demultiplexed sequencing data of DMS experiment, produce diagnostics p…
Updated: 2025-07-24 Release: v1.1.4formatting: failedlinting: passed
NCI-CGR
Trios analysis workflow written in Snakemake
Updated: 2025-07-23 Release: 1.0.0formatting: failedlinting: failed
liezeltamon
A Snakemake pipeline for processing 10X single-cell data
Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed
sims-lab
No description available.
Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed
cbg-ethz
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Updated: 2025-07-23 Release: v3.0.0.pre1formatting: passedlinting: failed
sims-lab
No description available.
Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed
snakemake-workflows
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Updated: 2025-07-23 Release: v3.0.0formatting: passedlinting: passed
orthanq
A Snakemake workflow for typing and quantifying HLAs using Orthanq.
Updated: 2025-07-23 Release: v1.1.1formatting: failedlinting: failed
flo-schu
Snakemake workflow for running end-to-end parameter inference, including customizable reporting
Updated: 2025-07-23 Release: Noneformatting: failedlinting: passed
epigen
A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) a…
Updated: 2025-07-21 Release: v2.2.0formatting: failedlinting: failed
PathoGenOmics-Lab
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
Updated: 2025-07-21 Release: v1.2.1formatting: failedlinting: failed
nezapajek
Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…
Updated: 2025-07-17 Release: Noneformatting: passedlinting: failed