Top workflows by update

baerlachlan

smk-rnaseq-counts

Snakemake workflow for estimating read counts from RNA-seq data

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Updated: 2025-11-10 Release: v1.3.2formatting: failedlinting: failed

1 stars

1 watchers

GilbertHan1011

ATAC-sm

Snakemake pipeline for ATAC-seq

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Updated: 2025-11-10 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

mkrg01

genome_assembly_pipeline

An integrated pipeline for eukaryotic genome assembly and gene annotation

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Updated: 2025-11-10 Release: Noneformatting: failedlinting: failed

1 stars

1 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2025-11-07 Release: v6.0.3formatting: failedlinting: failed

86 stars

6 watchers

3d-omics

hg_genotype

No description available.

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Updated: 2025-11-07 Release: v1.3.0formatting: passedlinting: failed

1 stars

1 watchers

nezapajek

project-tobamo

Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…

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Updated: 2025-11-07 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers

snakemake-workflows

rna-longseq-de-isoform

long read differential expression analysis and splice variant analysis

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Updated: 2025-11-07 Release: v2.4.2formatting: passedlinting: failed

3 stars

1 watchers

magwenelab

WeavePop

Workflow to Explore and Analyze Variants of Eukaryotic Populations

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Updated: 2025-11-06 Release: Noneformatting: passedlinting: failed

3 stars

2 watchers

kevinrue

snakemake-cellranger-count

No description available.

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Updated: 2025-11-06 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

fischuu

Pipeline-Holoruminant-Meta

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

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Updated: 2025-11-06 Release: 0.4.4formatting: failedlinting: failed

6 stars

3 watchers

GArcho44

snvs-annotation-pipeline

No description available.

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Updated: 2025-11-06 Release: Noneformatting: failedlinting: failed

4 stars

1 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2025-11-05 Release: Noneformatting: failedlinting: failed

6 stars

4 watchers

snakemake-workflows

cellranger-multi

A Snakemake workflow for preprocessing single cell RNAseq (scRNA-seq) data with cellranger multi (…

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Updated: 2025-11-05 Release: v2.0.0formatting: passedlinting: passed

0 stars

0 watchers

snakemake-workflows

effect-size-estimation

Generic, uncertainty aware, parameter free effect size estimation

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Updated: 2025-11-05 Release: v1.2.0formatting: passedlinting: passed

0 stars

1 watchers

mdondrup

yeast_variantcalling

A snakemake workflow for variant calling yeast samples with GATK

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Updated: 2025-11-05 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers