Top workflows by update

liezeltamon

single-cell-preprocess

A Snakemake pipeline for processing 10X single-cell data

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Updated: 2025-06-15 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

epigen

dea_limma

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) a…

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Updated: 2025-06-13 Release: v2.1.1formatting: failedlinting: failed

27 stars

4 watchers

tdayris

fair_genome_indexer

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low T…

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Updated: 2025-06-13 Release: 3.10.0formatting: passedlinting: passed

0 stars

1 watchers

moiexpositoalonsolab

grenepipe

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads,…

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Updated: 2025-06-13 Release: v0.15.0formatting: passedlinting: failed

101 stars

3 watchers

epigen

rnaseq_pipeline

RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

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Updated: 2025-06-12 Release: v1.1.1formatting: failedlinting: failed

9 stars

2 watchers

epigen

genome_tracks

A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned…

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Updated: 2025-06-12 Release: v2.0.3formatting: failedlinting: failed

24 stars

2 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2025-06-12 Release: v1.12.2formatting: passedlinting: passed

12 stars

1 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2025-06-12 Release: Noneformatting: passedlinting: passed

4 stars

5 watchers

aekrylova

scPASU

No description available.

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Updated: 2025-06-11 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

snakemake-workflows

dna-seq-short-read-circle-map

A snakemake workflow for calling extrachromosomal circular DNA in Illumina short-read sequencing dat…

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Updated: 2025-06-11 Release: v1.3.0formatting: passedlinting: passed

0 stars

2 watchers

MPUSP

snakemake-ont-basecalling

A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

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Updated: 2025-06-11 Release: v1.2.1formatting: passedlinting: passed

4 stars

2 watchers

epigen

unsupervised_analysis

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensio…

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Updated: 2025-06-10 Release: v3.0.1formatting: failedlinting: failed

27 stars

4 watchers

epigen

spilterlize_integrate

A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly v…

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Updated: 2025-06-10 Release: v3.0.1formatting: failedlinting: failed

18 stars

4 watchers

calliope-project

module_hydropower

No description available.

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Updated: 2025-06-07 Release: v0.1.1formatting: passedlinting: passed

0 stars

2 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2025-06-07 Release: v0.1.3formatting: passedlinting: passed

0 stars

2 watchers