Top workflows by update

FilippoGas

GeneProgramsProfiler

Characterize cell type specific gene program deregulations from scRNAseq datasets.

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Updated: 2026-08-16 Release: Noneformatting: failedlinting: passed

0 stars

0 watchers

ntnn19

combflow

snakemake workflow to run combfold

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Updated: 2026-08-15 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2026-08-14 Release: v6.10.0formatting: passedlinting: failed

91 stars

6 watchers

MPUSP

snakemake-ms-proteomics

Pipeline for automatic processing and quality control of mass spectrometry data

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Updated: 2026-08-14 Release: v1.1.0formatting: passedlinting: passed

14 stars

1 watchers

TRON-Bioinformatics

oblx

Reproducible generation of references and resources for next generation sequencing pipelines.

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Updated: 2026-08-14 Release: v2.0.0formatting: passedlinting: passed

5 stars

0 watchers

r1cheu

imputation

imputation pipeline for low-coverage sequencing in hybrid rice

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Updated: 2026-08-14 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

AToL-Bioinformatics

genome-launcher-workflow

No description available.

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Updated: 2026-08-14 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

SarahSaadain

pastForward

A Snakemake-based pipeline for processing and quality-controlling ancient DNA data, including contam…

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Updated: 2026-08-13 Release: v2.0.1formatting: failedlinting: passed

2 stars

1 watchers

JoseFcoMH

af3_screening

A snakemake workflow for protein-protein interaction screening with Alphafast (mmseqs + Alphafold 3)

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Updated: 2026-08-13 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2026-08-13 Release: v1.17.0formatting: passedlinting: passed

13 stars

0 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2026-08-13 Release: v0.1.1formatting: failedlinting: passed

9 stars

5 watchers

tmweiskittel

tmw_analysis_emseq

No description available.

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Updated: 2026-08-12 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

tmweiskittel

tmw_align_emseq

No description available.

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Updated: 2026-08-12 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

snakemake-workflows

single-cell-counts-preprocessing

A standardised Snakemake workflow for preprocessing of single-cell RNAseq count data following singl…

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Updated: 2026-08-12 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

Phlya

tagmap

Map insertions of transopable elements using tagmentation

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Updated: 2026-08-12 Release: Noneformatting: failedlinting: passed

0 stars

1 watchers