Top workflows by update

niekwit

cut_and_run

Snakemake workflow for Cut & Run

---

Updated: 2026-11-10 Release: v0.5.0formatting: failedlinting: failed

6 stars

1 watchers

modelblocks-org

module_euro_industry

No description available.

---

Updated: 2026-11-10 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

spjuhel

Climada_TC_TCSurge_Generation

Generating consistent TC and TC Surge hazard set event using Snakemake and CLIMADA

---

Updated: 2026-11-10 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

mkrg01

genome_assembly_pipeline

An integrated pipeline for eukaryotic genome assembly and gene annotation

---

Updated: 2026-11-10 Release: Noneformatting: failedlinting: passed

4 stars

1 watchers

GArcho44

snvs-annotation-pipeline

proStAMP is a Snakemake pipeline for protein structure-based annotation of microbial SNPs, integrati…

---

Updated: 2026-11-09 Release: v0.0.3formatting: failedlinting: failed

7 stars

1 watchers

loucerac

bps-workflow

No description available.

---

Updated: 2026-11-08 Release: v0.1.2formatting: passedlinting: failed

0 stars

0 watchers

solida-core

musta

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

---

Updated: 2026-11-08 Release: v1.2.2formatting: failedlinting: passed

0 stars

2 watchers

milesroberts-123

custom-rag-cli

playing around with ollama and llama index to pass files to an LLM

---

Updated: 2026-11-07 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

modelblocks-org

module_area_potentials

Geospatial analysis to determine available land area for energy infrastructure

---

Updated: 2026-11-06 Release: v2.0.0formatting: passedlinting: passed

3 stars

0 watchers

KasperSkytte

snakemake_savont

Minimalistic amplicon workflow for ONT data with ASVs generated by savont

---

Updated: 2026-11-06 Release: v2.1.1formatting: passedlinting: passed

1 stars

0 watchers

niekwit

smallRNA-seq

Snakemake workflow for small RNA-seq analysis

---

Updated: 2026-11-06 Release: v0.7.0formatting: passedlinting: failed

4 stars

0 watchers

daspacio9

pooledpremiumpcrpipeline2

A snakemake pipeline for multiplex sequencing using the Plasmidsaurus Premium PCR service

---

Updated: 2026-11-05 Release: v4.0.2formatting: passedlinting: passed

6 stars

0 watchers

mpitz123

RNA_seq_alignment

Preparation and alignment of RNA_seq paired-end data with Hisat2 and Picard and counting with HTseq

---

Updated: 2026-11-05 Release: Noneformatting: passedlinting: failed

0 stars

0 watchers

fischuu

Snakebite-Holoruminant-MetaG

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

---

Updated: 2026-11-05 Release: 0.4.62formatting: failedlinting: failed

9 stars

3 watchers

modelblocks-org

module_euro_building_heat

This module prepares time series of heat demand and heat supply technologies for buildings in Europ…

---

Updated: 2026-11-05 Release: v0.1.0formatting: passedlinting: passed

0 stars

0 watchers