Top workflows by update

epigen

spilterlize_integrate

A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly v…

---

Updated: 2025-09-27 Release: v3.0.5formatting: failedlinting: failed

28 stars

4 watchers

epigen

dea_limma

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) a…

---

Updated: 2025-09-27 Release: v2.2.1formatting: failedlinting: failed

38 stars

4 watchers

epigen

enrichment_analysis

A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment …

---

Updated: 2025-09-27 Release: v2.0.3formatting: failedlinting: failed

49 stars

2 watchers

thomasteisberg

xopr-snakemake-demo

No description available.

---

Updated: 2025-09-27 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

niekwit

methyl-seq

Snakemake workflow for bisulphite sequencing analysis

---

Updated: 2025-09-26 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

fischuu

Pipeline-Holoruminant-Meta

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

---

Updated: 2025-09-26 Release: 0.3formatting: failedlinting: failed

6 stars

3 watchers

nezapajek

project-tobamo

Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…

---

Updated: 2025-09-26 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

---

Updated: 2025-09-26 Release: v0.5.5formatting: failedlinting: passed

10 stars

1 watchers

cbg-ethz

V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

---

Updated: 2025-09-25 Release: v3.0.0.pre1formatting: passedlinting: failed

139 stars

9 watchers

tucca-cellag

tucca-rna-seq

TUCCA’s RNA-Seq Workflow for Differential Expression and Pathway Enrichment Analysis

---

Updated: 2025-09-25 Release: v0.9.0formatting: passedlinting: passed

18 stars

13 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

---

Updated: 2025-09-25 Release: v1.4.1formatting: passedlinting: passed

1 stars

1 watchers

sanjaysgk

WES_RNA_Pipeline

No description available.

---

Updated: 2025-09-25 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

---

Updated: 2025-09-24 Release: Noneformatting: failedlinting: failed

7 stars

4 watchers

liezeltamon

single-cell-preprocess

A Snakemake pipeline for processing 10X single-cell data

---

Updated: 2025-09-19 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

NCI-CGR

TriosCompass_v2

Trios analysis workflow written in Snakemake

---

Updated: 2025-09-18 Release: 1.0.0formatting: failedlinting: failed

3 stars

4 watchers