Top workflows by update

SarahSaadain

Single_Copy_Gene_Selector

This repository contains a Snakemake pipeline which can be used to determine the best SCGs for aDNA …

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Updated: 2026-05-10 Release: v1.0.1formatting: failedlinting: failed

0 stars

0 watchers

daspacio9

pooledpremiumpcrpipeline2

A snakemake pipeline for multiplex sequencing using the Plasmidsaurus Premium PCR service

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Updated: 2026-05-09 Release: Downsampleformatting: failedlinting: passed

1 stars

0 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

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Updated: 2026-05-09 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

r1cheu

imputation

imputation pipeline for low-coverage sequencing in hybrid rice

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Updated: 2026-05-09 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

niekwit

methyl-seq

Snakemake workflow for bisulphite sequencing analysis

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Updated: 2026-05-08 Release: 0.5.0formatting: failedlinting: failed

2 stars

0 watchers

PyPSA

grid-builder

A modular Snakemake workflow for constructing and validating power grid models using OpenStreetMap d…

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Updated: 2026-05-08 Release: Noneformatting: failedlinting: failed

4 stars

0 watchers

MathiasEskildsen

ONT-AmpSeq

Snakemake workflow to generate OTU tables from barcoded ONT data

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Updated: 2026-05-08 Release: v1.1.2formatting: failedlinting: passed

21 stars

4 watchers

AToL-Bioinformatics

genome-launcher-workflow

No description available.

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Updated: 2026-05-08 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

usnistgov

defrabb

Genome In A Bottle Development Framework for Assembly Based Benchmarks

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Updated: 2026-05-07 Release: Noneformatting: passedlinting: failed

8 stars

1 watchers

epigen

unsupervised_analysis

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensio…

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Updated: 2026-05-07 Release: v4.0.0formatting: passedlinting: passed

67 stars

4 watchers

xin-huang

selscape

Snakemake Workflow for Investigating Genomic Landscapes of Natural Selection

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Updated: 2026-05-07 Release: v1.0.0formatting: failedlinting: failed

1 stars

2 watchers

niekwit

rna-seq-star-tetranscripts

Snakemake workflow for transposable element RNA-Seq using TEtranscripts

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Updated: 2026-05-07 Release: v0.5.0formatting: failedlinting: failed

5 stars

1 watchers

niekwit

smallRNA-seq

Snakemake workflow for small RNA-seq analysis

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Updated: 2026-05-07 Release: v0.2.2formatting: passedlinting: failed

3 stars

0 watchers

AntonJMLarsson

lustre_snakemake_pipeline

A snakemake workflow for analyzing LUSTRE data.

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Updated: 2026-05-07 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

modelblocks-org

module_powerplants

Harmonised global powerplant data at any resolution 🏭⚡

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Updated: 2026-05-06 Release: Noneformatting: passedlinting: failed

1 stars

2 watchers