Top workflows by update

baerlachlan

smk-rnaseq-counts

Snakemake workflow for estimating read counts from RNA-seq data

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Updated: 2026-02-09 Release: v1.3.4formatting: failedlinting: failed

1 stars

1 watchers

fischuu

Snakebite-Holoruminant-MetaG

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

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Updated: 2026-02-07 Release: 0.4.53formatting: failedlinting: failed

9 stars

3 watchers

magwenelab

WeavePop

Workflow to Explore and Analyze Variants of Eukaryotic Populations

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Updated: 2026-02-06 Release: v0.0.1formatting: passedlinting: failed

3 stars

2 watchers

LiaOb21

FSP_assembly_benchmarking

No description available.

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Updated: 2026-02-06 Release: v_2.0.0formatting: passedlinting: passed

1 stars

0 watchers

friendsofstrandseq

mosaicatcher-pipeline

Integrated workflow for SV calling from single-cell Strand-seq data

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Updated: 2026-02-06 Release: v2.4.0-beta.2formatting: passedlinting: failed

25 stars

11 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2026-02-06 Release: v1.15.0formatting: failedlinting: passed

13 stars

0 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2026-02-05 Release: Noneformatting: failedlinting: failed

6 stars

4 watchers

calliope-project

module_co2stop_cdr

A module to aggregate CDR potential from the CO2Stop dataset into flexible spatial resolutions

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Updated: 2026-01-31 Release: v0.1.2formatting: passedlinting: passed

0 stars

0 watchers

aryazand

proseq_workflow

A workflow for processing and analyzing proseq data

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Updated: 2026-01-29 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

epigen

scrnaseq_processing_seurat

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq d…

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Updated: 2026-01-29 Release: v3.0.9formatting: failedlinting: failed

54 stars

4 watchers

zavolanlab

zarp

The Zavolab Automated RNA-seq Pipeline

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Updated: 2026-01-29 Release: v1.0.0formatting: passedlinting: passed

35 stars

6 watchers

mkrg01

genome_assembly_pipeline

An integrated pipeline for eukaryotic genome assembly and gene annotation

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Updated: 2026-01-29 Release: Noneformatting: failedlinting: failed

2 stars

1 watchers

aryazand

fastq-process-align

snakemake based pipeline for processing and mapping fastq files

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Updated: 2026-01-29 Release: Noneformatting: passedlinting: failed

0 stars

0 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2026-01-28 Release: v6.4.0formatting: failedlinting: passed

88 stars

6 watchers

Sadia12345

Thesis-BMI-Prediction-Snakemake

Reproducible Snakemake workflow for predicting BMI from human gut microbiome profiles using machine …

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Updated: 2026-01-28 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers