Top workflows by update

ylab-hi

ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources

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Updated: 2026-09-27 Release: v0.6.2formatting: failedlinting: passed

22 stars

3 watchers

andyngh

noHiC-Snakemake

A Snakemake reimplementation of noHiC - the personalized reference-guided contig scaffolding pipelin…

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Updated: 2026-09-27 Release: v1.1.0formatting: failedlinting: failed

1 stars

1 watchers

SarahSaadain

pastForward

A Snakemake-based pipeline for processing and quality-controlling ancient and historical DNA data, i…

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Updated: 2026-09-26 Release: v2.1.0formatting: failedlinting: failed

6 stars

1 watchers

xin-huang

selscape

Snakemake Workflow for Investigating Genomic Landscapes of Natural Selection

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Updated: 2026-09-25 Release: v1.0.0formatting: failedlinting: failed

1 stars

2 watchers

daspacio9

pooledpremiumpcrpipeline2

A snakemake pipeline for multiplex sequencing using the Plasmidsaurus Premium PCR service

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Updated: 2026-09-25 Release: v4.0.2formatting: passedlinting: passed

6 stars

0 watchers

modelblocks-org

module_demand_electricity

A module to prepare demand profiles for Europe at arbitrary spatial resolution, based on ENTSO-E his…

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Updated: 2026-09-25 Release: v0.2.0formatting: passedlinting: passed

0 stars

0 watchers

modelblocks-org

module_powerplants

Harmonised global powerplant data at any resolution 🏭⚡

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Updated: 2026-09-25 Release: v0.1.2formatting: passedlinting: passed

1 stars

2 watchers

PyPSA

grid-builder

A modular Snakemake workflow for constructing and validating power grid models using OpenStreetMap d…

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Updated: 2026-09-25 Release: Noneformatting: failedlinting: failed

6 stars

0 watchers

MPUSP

snakemake-ms-proteomics

Pipeline for automatic processing and quality control of mass spectrometry data

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Updated: 2026-09-25 Release: v1.1.1formatting: passedlinting: passed

14 stars

1 watchers

snakemake-workflows

rna-seq-xengsort

A standardized Snakemake workflow to separate host and graft sequencing reads from RNAseq data using…

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Updated: 2026-09-25 Release: v1.2.0formatting: passedlinting: passed

0 stars

0 watchers

niekwit

eCLIP

Snakemake workflow for eCLIP and related experiments

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Updated: 2026-09-25 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers

modelblocks-org

module_area_potentials

Geospatial analysis to determine available land area for energy infrastructure

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Updated: 2026-09-25 Release: v2.0.0formatting: passedlinting: passed

3 stars

0 watchers

TRON-Bioinformatics

oblx

Reproducible generation of references and resources for next generation sequencing pipelines.

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Updated: 2026-09-24 Release: v2.0.2formatting: passedlinting: passed

6 stars

0 watchers

niekwit

methyl-seq

Snakemake workflow for EM-seq / bisulfite sequencing (WGBS) DNA methylation analysis

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Updated: 2026-09-24 Release: v0.6.0formatting: passedlinting: failed

3 stars

0 watchers

kircherlab

MPRAsnakeflow

With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is…

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Updated: 2026-09-23 Release: v0.7.2formatting: passedlinting: passed

16 stars

1 watchers