Top workflows by update

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

---

Updated: 2025-07-26 Release: Noneformatting: failedlinting: failed

7 stars

4 watchers

snakemake-workflows

snakemake-workflow-template

A template for standard compliant snakemake-workflows

---

Updated: 2025-07-26 Release: Noneformatting: passedlinting: passed

107 stars

2 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

---

Updated: 2025-07-25 Release: Noneformatting: passedlinting: passed

6 stars

5 watchers

durr1602

gyoza

Snakemake pipeline to analyze demultiplexed sequencing data of DMS experiment, produce diagnostics p…

---

Updated: 2025-07-24 Release: v1.1.4formatting: failedlinting: passed

1 stars

1 watchers

NCI-CGR

TriosCompass_v2

Trios analysis workflow written in Snakemake

---

Updated: 2025-07-23 Release: 1.0.0formatting: failedlinting: failed

2 stars

4 watchers

liezeltamon

single-cell-preprocess

A Snakemake pipeline for processing 10X single-cell data

---

Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

sims-lab

snakemake-cncb-genetic-demultiplexing

No description available.

---

Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

cbg-ethz

V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

---

Updated: 2025-07-23 Release: v3.0.0.pre1formatting: passedlinting: failed

138 stars

9 watchers

sims-lab

snakemake-cncb-index-ensembl-genome

No description available.

---

Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

snakemake-workflows

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

---

Updated: 2025-07-23 Release: v3.0.0formatting: passedlinting: passed

68 stars

4 watchers

orthanq

orthanq-hla-quantification

A Snakemake workflow for typing and quantifying HLAs using Orthanq.

---

Updated: 2025-07-23 Release: v1.1.1formatting: failedlinting: failed

0 stars

0 watchers

flo-schu

pymob-workflow

Snakemake workflow for running end-to-end parameter inference, including customizable reporting

---

Updated: 2025-07-23 Release: Noneformatting: failedlinting: passed

0 stars

1 watchers

epigen

dea_limma

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) a…

---

Updated: 2025-07-21 Release: v2.2.0formatting: failedlinting: failed

28 stars

4 watchers

PathoGenOmics-Lab

VIPERA

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

---

Updated: 2025-07-21 Release: v1.2.1formatting: failedlinting: failed

6 stars

1 watchers

nezapajek

project-tobamo

Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…

---

Updated: 2025-07-17 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers