Top workflows by update

aryazand

proseq_workflow

A workflow for processing and analyzing proseq data

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Updated: 2026-01-05 Release: Noneformatting: passedlinting: failed

0 stars

0 watchers

fischuu

Pipeline-Holoruminant-Meta

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

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Updated: 2026-01-04 Release: 0.4.41formatting: failedlinting: failed

8 stars

3 watchers

xin-huang

selscape

Snakemake Workflow for Investigating Genomic Landscapes of Natural Selection

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Updated: 2026-01-03 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

regulatory-genomics

hic_sm

No description available.

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Updated: 2026-01-03 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

aryazand

fastq-process-align

snakemake based pipeline for processing and mapping fastq files

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Updated: 2026-01-03 Release: Noneformatting: failedlinting: passed

0 stars

0 watchers

jma1991

arrays

A Snakemake workflow to analyse Affymetrix expression arrays

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Updated: 2026-01-02 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers

PathoGenOmics-Lab

VIPERA

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

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Updated: 2026-01-02 Release: v1.3.1formatting: failedlinting: failed

8 stars

1 watchers

aryazand

rnaseq_to_genome_annotation

Use RNA-seq data to annotate genome

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Updated: 2026-01-02 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

zavolanlab

mirflowz

Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries…

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Updated: 2026-01-02 Release: v0.10.0formatting: passedlinting: passed

6 stars

4 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2025-12-30 Release: v6.2.4formatting: failedlinting: passed

88 stars

6 watchers

koesterlab

rossi-ips-dmr

Calling and plotting of differentially methylated regions between two or more biological samples in …

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Updated: 2025-12-29 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2025-12-29 Release: Noneformatting: failedlinting: failed

6 stars

4 watchers

loganylchen

RNA-seq-analysis-pipeline

No description available.

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Updated: 2025-12-29 Release: Noneformatting: failedlinting: passed

0 stars

1 watchers

JoyceS13

BEP_pipeline

No description available.

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Updated: 2025-12-23 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

NCI-CGR

TriosCompass_v2

Trios analysis workflow written in Snakemake

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Updated: 2025-12-22 Release: 1.0.0formatting: failedlinting: failed

3 stars

4 watchers