Top workflows by update

fischuu

Snakebite-Holoruminant-MetaG

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analys…

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Updated: 2026-01-25 Release: 0.4.47formatting: failedlinting: failed

9 stars

3 watchers

calliope-project

module_co2stop_cdr

A module to aggregate CDR potential from the CO2Stop dataset into flexible spatial resolutions

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Updated: 2026-01-23 Release: Noneformatting: failedlinting: passed

0 stars

0 watchers

aryazand

proseq_workflow

A workflow for processing and analyzing proseq data

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Updated: 2026-01-23 Release: Noneformatting: passedlinting: failed

0 stars

0 watchers

niekwit

rna-seq-star-deseq2

Snakemake workflow for RNA-Seq differential transcript analysis using STAR/Deseq2

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Updated: 2026-01-23 Release: v0.5.0formatting: failedlinting: failed

1 stars

1 watchers

nezapajek

project-tobamo

Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…

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Updated: 2026-01-23 Release: Noneformatting: passedlinting: failed

0 stars

1 watchers

calliope-project

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2026-01-23 Release: v0.1.9formatting: passedlinting: passed

1 stars

2 watchers

snakemake-workflows

microsatellite-instability-detection-with-msisensor-pro

Best practices snakemake workflow for microsatellite instability (MSI) detection with msisensor-pro.

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Updated: 2026-01-23 Release: v1.1.0formatting: passedlinting: passed

2 stars

1 watchers

SilvanCodes

ag-wiehe-ndm

No description available.

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Updated: 2026-01-22 Release: Noneformatting: passedlinting: passed

0 stars

0 watchers

koesterlab

rossi-ips-dmr

Calling and plotting of differentially methylated regions between two or more biological samples in …

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Updated: 2026-01-22 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

calliope-project

module_euro_gas_grid

A module to create disaggregated gas grid networks and H2 retrofits for European countries.

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Updated: 2026-01-22 Release: v0.1.0formatting: passedlinting: passed

0 stars

0 watchers

niekwit

smallRNA-seq

Snakemake workflow for small RNA-seq analysis

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Updated: 2026-01-22 Release: Noneformatting: failedlinting: failed

1 stars

0 watchers

zhuakexi

dna-seq-gatk-variant-calling

No description available.

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Updated: 2026-01-22 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

baerlachlan

smk-rnaseq-counts

Snakemake workflow for estimating read counts from RNA-seq data

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Updated: 2026-01-22 Release: v1.3.3formatting: failedlinting: failed

1 stars

1 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2026-01-21 Release: Noneformatting: failedlinting: failed

6 stars

4 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2026-01-21 Release: v6.3.1formatting: failedlinting: passed

88 stars

6 watchers