Top workflows by update

niekwit

smallRNA-seq

Snakemake workflow for small RNA-seq analysis

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Updated: 2026-04-22 Release: v0.1formatting: failedlinting: failed

2 stars

0 watchers

MPUSP

snakemake-assembly-postprocessing

A Snakemake workflow for the post-processing of microbial genome assemblies.

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Updated: 2026-04-22 Release: v1.3.0formatting: passedlinting: passed

1 stars

0 watchers

mkrg01

genome_assembly_pipeline

An integrated pipeline for eukaryotic genome assembly and gene annotation

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Updated: 2026-04-22 Release: Noneformatting: failedlinting: passed

2 stars

1 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2026-04-22 Release: v0.1.1formatting: failedlinting: passed

9 stars

5 watchers

nodrogluap

tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

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Updated: 2026-04-21 Release: Noneformatting: failedlinting: failed

6 stars

4 watchers

nismod

open-gira

Open-data Global Infrastructure Risk/Resilience Analysis

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Updated: 2026-04-21 Release: v0.4.2formatting: failedlinting: failed

22 stars

3 watchers

epigen

unsupervised_analysis

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensio…

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Updated: 2026-04-21 Release: v3.0.3formatting: failedlinting: failed

67 stars

4 watchers

aryazand

fastq-process-align

snakemake based pipeline for processing and mapping fastq files

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Updated: 2026-04-21 Release: Noneformatting: passedlinting: failed

0 stars

0 watchers

snakemake-workflows

rna-longseq-de-isoform

long read differential expression analysis and splice variant analysis

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Updated: 2026-04-20 Release: v2.6.0formatting: passedlinting: failed

3 stars

1 watchers

modelblocks-org

module_geo_boundaries

A module to create arbitrary regional boundary datasets for energy systems modelling

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Updated: 2026-04-20 Release: v0.2.0formatting: passedlinting: failed

3 stars

2 watchers

AToL-Bioinformatics

genome-launcher-workflow

No description available.

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Updated: 2026-04-20 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

tmweiskittel

tmwalign

No description available.

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Updated: 2026-04-18 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

merfre

MMCAW

Reproducible Snakemake workflow for ONT metagenomic microbiome analysis with multi-tool taxonomic as…

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Updated: 2026-04-18 Release: v1.1.0formatting: failedlinting: failed

0 stars

1 watchers

merfre

Adaptive_Sequencing_Analysis_Workflow

Snakemake workflow for ONT adaptive sequencing data integrating QC, taxonomy (Kraken2), rejected rea…

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Updated: 2026-04-18 Release: v.1.1.0formatting: failedlinting: failed

1 stars

2 watchers

cecivale

snakemake-phylo-beast2

Snakemake workflow to run beast2 analysis with genetic sequences

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Updated: 2026-04-17 Release: v0.1formatting: failedlinting: failed

0 stars

1 watchers