Top workflows by update

nodrogluap

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake


Updated: 2025-07-26 Release: Noneformatting: failedlinting: failed

snakemake-workflows

A template for standard compliant snakemake-workflows


Updated: 2025-07-26 Release: Noneformatting: passedlinting: passed

StergachisLab

Pipeline for MAS-Seq processing


Updated: 2025-07-25 Release: Noneformatting: passedlinting: passed

durr1602

Snakemake pipeline to analyze demultiplexed sequencing data of DMS experiment, produce diagnostics p…


Updated: 2025-07-24 Release: v1.1.4formatting: failedlinting: passed

NCI-CGR

Trios analysis workflow written in Snakemake


Updated: 2025-07-23 Release: 1.0.0formatting: failedlinting: failed

liezeltamon

A Snakemake pipeline for processing 10X single-cell data


Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed

sims-lab

No description available.


Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed

cbg-ethz

V-pipe is a pipeline designed for analysing NGS data of short viral genomes


Updated: 2025-07-23 Release: v3.0.0.pre1formatting: passedlinting: failed

sims-lab

No description available.


Updated: 2025-07-23 Release: Noneformatting: failedlinting: failed

snakemake-workflows

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.


Updated: 2025-07-23 Release: v3.0.0formatting: passedlinting: passed

orthanq

A Snakemake workflow for typing and quantifying HLAs using Orthanq.


Updated: 2025-07-23 Release: v1.1.1formatting: failedlinting: failed

flo-schu

Snakemake workflow for running end-to-end parameter inference, including customizable reporting


Updated: 2025-07-23 Release: Noneformatting: failedlinting: passed

epigen

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) a…


Updated: 2025-07-21 Release: v2.2.0formatting: failedlinting: failed

PathoGenOmics-Lab

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis


Updated: 2025-07-21 Release: v1.2.1formatting: failedlinting: failed

nezapajek

Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large ac…


Updated: 2025-07-17 Release: Noneformatting: passedlinting: failed