Top workflows by watchers

crs4

fair-crcc-get-data

No description available.

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Updated: 2022-10-27 Release: v1.0.0formatting: failedlinting: failed

0 stars

13 watchers

friendsofstrandseq

mosaicatcher-pipeline

Integrated workflow for SV calling from single-cell Strand-seq data

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Updated: 2024-07-30 Release: 2.3.5formatting: failedlinting: failed

21 stars

12 watchers

cbg-ethz

V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

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Updated: 2025-01-24 Release: v3.0.0.pre1formatting: passedlinting: failed

134 stars

11 watchers

snakemake-workflows

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

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Updated: 2024-09-13 Release: v2.1.2formatting: passedlinting: passed

321 stars

11 watchers

snakemake-workflows

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

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Updated: 2023-06-29 Release: v2.1.1formatting: failedlinting: passed

207 stars

9 watchers

open2c

distiller-sm

a Snakemake version of distiller - the Open2C Hi-C mapping workflow

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Updated: 2025-01-31 Release: Noneformatting: passedlinting: failed

4 stars

8 watchers

ETH-NEXUS

gExcite_pipeline

single-cell Gene and AnTibody Expression pipeline

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Updated: 2023-05-24 Release: Noneformatting: failedlinting: failed

2 stars

7 watchers

SchlossLab

mikropml-snakemake-workflow

Snakemake template for building reusable and scalable machine learning pipelines with mikropml

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Updated: 2025-02-26 Release: v1.3.0formatting: passedlinting: passed

12 stars

7 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2025-03-09 Release: v5.14.0formatting: failedlinting: passed

83 stars

7 watchers

hzi-bifo

phylogeny-of-single-cells

snakemake workflow for the phylogenetic reconstruction of single cell lineages from multiple displac…

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Updated: 2025-02-11 Release: Noneformatting: failedlinting: failed

0 stars

6 watchers

fmi-basel

ggiorget_ms2analysis

No description available.

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Updated: 2024-11-14 Release: Noneformatting: failedlinting: failed

0 stars

6 watchers

hzi-bifo

snakemake-workflow-univec-removal

A small Snakemake workflow to remove contaminating vector sequences from raw sequencing data using U…

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Updated: 2022-02-03 Release: v1.0.0formatting: failedlinting: passed

0 stars

6 watchers

zavolanlab

zarp

The Zavolab Automated RNA-seq Pipeline

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Updated: 2024-11-02 Release: v1.0.0-rc.1formatting: passedlinting: failed

35 stars

6 watchers

StergachisLab

IsoSeq_smk

Pipeline for MAS-Seq processing

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Updated: 2025-03-06 Release: Noneformatting: failedlinting: failed

2 stars

5 watchers

ncbench

ncbench-workflow

No description available.

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Updated: 2025-01-20 Release: v1.1.0formatting: passedlinting: failed

13 stars

5 watchers