Snakemake executor plugin: cluster-sync
Warning
No documentation found in repository https://github.com/snakemake/snakemake-executor-plugin-cluster-sync. The plugin should provide a docs/intro.md with some introductory sentences and optionally a docs/further.md file with details beyond the auto-generated usage instructions presented in this catalog.
Installation
Install this plugin by installing it with pip or mamba, e.g.:
pip install snakemake-executor-plugin-cluster-sync
Usage
In order to use the plugin, run Snakemake (>=8.0) with the corresponding value for the executor flag:
snakemake --executor cluster-sync ...
with ... being any additional arguments you want to use.
Settings
The executor plugin has the following settings (which can be passed via command line, the workflow or environment variables, if provided in the respective columns):
CLI argument |
Description |
Default |
Choices |
Required |
Type |
|---|---|---|---|---|---|
|
Submission command for synchronous cluster submission (expecting jobscript as single argument). |
|
✗ |