Snakemake executor plugin: htcondor

Warning

This plugin is not maintained and reviewed by the official Snakemake organization.

Warning

No documentation found in repository https://github.com/jannisspeer/snakemake-executor-plugin-htcondor. The plugin should provide a docs/intro.md with some introductory sentences and optionally a docs/further.md file with details beyond the auto-generated usage instructions presented in this catalog.

Installation

Install this plugin by installing it with pip or mamba, e.g.:

pip install snakemake-executor-plugin-htcondor

Usage

In order to use the plugin, run Snakemake (>=8.0) with the corresponding value for the executor flag:

snakemake --executor htcondor ...

with ... being any additional arguments you want to use.

Settings

The executor plugin has the following settings (which can be passed via command line, the workflow or environment variables, if provided in the respective columns):

Settings

CLI argument	Description	Default	Choices	Required	Type
--htcondor-jobdir VALUE	Directory where the job will create a directory to store log, output and error files.	'.snakemake/htcondor'		✓