Snakemake logger plugin: github-status

Installation

Install this plugin by installing it with pip or mamba directly, e.g.:

pip install snakemake-logger-plugin-github-status

Or, if you are using pixi, add the plugin to your pixi.toml. Be careful to put it under the right dependency type based on the plugin’s availability, e.g.:

snakemake-logger-plugin-github-status = "*"

Usage

In order to use the plugin, run Snakemake (>=9.11) with the corresponding value for the logger flag:

snakemake --logger github-status ...

with ... being any additional arguments you want to use.